Miyakogusa Predicted Gene

Lj4g3v1388310.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1388310.2 tr|F4KAP9|F4KAP9_ARATH SAP domain-containing
protein OS=Arabidopsis thaliana GN=At5g63460 PE=4 SV=1,42.42,3e-19,SAP
domain,NULL; DDA1,Ubiquitin ligase, Det1/DDB1-complexing;
SAP,DNA-binding SAP; no description,DN,CUFF.49112.2
         (144 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g103580.1 | Det1 complexing ubiquitin ligase | HC | chr4:4...   181   2e-46
Medtr4g103580.2 | Det1 complexing ubiquitin ligase | HC | chr4:4...   154   3e-38

>Medtr4g103580.1 | Det1 complexing ubiquitin ligase | HC |
           chr4:42810830-42813962 | 20130731
          Length = 148

 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/138 (71%), Positives = 109/138 (78%), Gaps = 9/138 (6%)

Query: 9   VSPFLTNLPSRGLFSSPVISSNPGGMRVYVCDHETSPPEDQLIKTNQQNILIRSLTLKNG 68
            S FL NLP RG F+S  ISSNP  MRVYVCDHET+PPE Q IKTNQQNILIR+L LKN 
Sbjct: 12  ASQFLANLPLRGTFTSTAISSNPDRMRVYVCDHETTPPEGQHIKTNQQNILIRALKLKNV 71

Query: 69  SDASKKRTAEKALDSRASAKR----TTPINTRQEGSNSQTPNRDFHSLTVERLRALLKAK 124
           SD+SKKRTAEK L   ASAK+    TTP   +QEGSN QT +R+F SLTVERLRALL+AK
Sbjct: 72  SDSSKKRTAEKVLG--ASAKKLNNQTTP---QQEGSNGQTSSRNFQSLTVERLRALLRAK 126

Query: 125 GLSTKGKKEELITRLKEV 142
           GL TKGKKEELITRLK+ 
Sbjct: 127 GLPTKGKKEELITRLKDA 144


>Medtr4g103580.2 | Det1 complexing ubiquitin ligase | HC |
           chr4:42809805-42813962 | 20130731
          Length = 148

 Score =  154 bits (388), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 93/112 (83%), Gaps = 9/112 (8%)

Query: 34  MRVYVCDHETSPPEDQLIKTNQQNILIRSLTLKNGSDASKKRTAEKALDSRASAKR---- 89
           MRVYVCDHET+PPE Q IKTNQQNILIR+L LKN SD+SKKRTAEK L   ASAK+    
Sbjct: 37  MRVYVCDHETTPPEGQHIKTNQQNILIRALKLKNVSDSSKKRTAEKVLG--ASAKKLNNQ 94

Query: 90  TTPINTRQEGSNSQTPNRDFHSLTVERLRALLKAKGLSTKGKKEELITRLKE 141
           TTP   +QEGSN QT +R+F SLTVERLRALL+AKGL TKGKKEELITRLK+
Sbjct: 95  TTP---QQEGSNGQTSSRNFQSLTVERLRALLRAKGLPTKGKKEELITRLKD 143