Miyakogusa Predicted Gene

Lj4g3v1376890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1376890.1 CUFF.49094.1
         (335 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g102860.1 | replication factor C subunit 2 | HC | chr4:426...   637   0.0  
Medtr3g088380.1 | replication factor C subunit 2 | HC | chr3:401...   220   2e-57
Medtr3g088380.2 | replication factor C subunit 2 | HC | chr3:401...   220   2e-57
Medtr3g088120.1 | replication factor C subunit 5 | HC | chr3:399...   211   9e-55
Medtr3g088120.2 | replication factor C subunit 5 | HC | chr3:399...   203   2e-52
Medtr4g102700.1 | replication factor C subunit | HC | chr4:42565...   159   4e-39
Medtr6g027590.1 | DNA replication factor C complex subunit 3 | H...   102   6e-22
Medtr6g471010.1 | DNA replication factor C complex subunit 3 | H...   101   9e-22
Medtr6g471010.2 | DNA replication factor C complex subunit 3 | H...   101   9e-22
Medtr3g118160.1 | replication factor C subunit, putative | HC | ...    88   1e-17
Medtr4g050180.1 | replication factor C1 | HC | chr4:17764475-177...    68   1e-11
Medtr4g050180.2 | replication factor C1 | HC | chr4:17764874-177...    68   1e-11
Medtr4g134530.1 | DNA polymerase III subunit gamma/tau | HC | ch...    62   9e-10
Medtr4g104350.2 | DNA polymerase III subunit gamma/tau | HC | ch...    53   4e-07
Medtr4g104350.1 | DNA polymerase III subunit gamma/tau | HC | ch...    53   4e-07
Medtr5g098850.1 | AAA family ATPase | HC | chr5:43286117-4328397...    52   7e-07
Medtr1g047790.1 | chromosome transmission fidelity protein | HC ...    50   3e-06

>Medtr4g102860.1 | replication factor C subunit 2 | HC |
           chr4:42642450-42637960 | 20130731
          Length = 333

 Score =  637 bits (1644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/321 (93%), Positives = 315/321 (98%)

Query: 15  YDVPWVEKYRPSKVADIVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 74
           YDVPWVEKYRPSKV DIVGN+DAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL
Sbjct: 13  YDVPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 72

Query: 75  LGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTTGAQQA 134
           LGPN +EAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEADSMT+GAQQA
Sbjct: 73  LGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQA 132

Query: 135 LRRTIEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVKAEKVPY 194
           LRRT+EIYSN+TRFALACNTS+KIIEPIQSRCAIVRFSRLSDQEILGRLM+VV+AEKVPY
Sbjct: 133 LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPY 192

Query: 195 VPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEG 254
           VPEGLEAIIFTADGDMRQ LNNLQAT+SGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEG
Sbjct: 193 VPEGLEAIIFTADGDMRQGLNNLQATFSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEG 252

Query: 255 NFDEACTGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYMKLEFMKETGFAHMRICDGVGS 314
           NFDEAC+GLKQLYDLGYSPTDIITTLFRIIK+YDMAEY+KLEFMKETGFAHMRICDGVGS
Sbjct: 253 NFDEACSGLKQLYDLGYSPTDIITTLFRIIKSYDMAEYLKLEFMKETGFAHMRICDGVGS 312

Query: 315 YLQLCGLLAKLFLVRETAKAA 335
           YLQ+CGLLAK  LVR+TA AA
Sbjct: 313 YLQMCGLLAKFALVRDTANAA 333


>Medtr3g088380.1 | replication factor C subunit 2 | HC |
           chr3:40162477-40157119 | 20130731
          Length = 339

 Score =  220 bits (560), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/316 (39%), Positives = 182/316 (57%), Gaps = 10/316 (3%)

Query: 18  PWVEKYRPSKVADIVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 77
           PWVEKYRP +V D+   ++ V  L      G+ P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 78  NC-KEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTT 129
              K  VLELNASDDRGI+VVR KIK FA       + K   P   +KI++LDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIVLDEADSMTE 129

Query: 130 GAQQALRRTIEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVKA 189
            AQ ALRRT+E YS  TRF   CN  ++IIEP+ SRCA  RF  L+++ +  R++ + K 
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRIVYICKE 189

Query: 190 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-QFVNQANVFKVCDQPHPLHVKNMV 248
           E +    EGL  +   + GD+R+A+  LQ+    F   ++  ++  V        V+ ++
Sbjct: 190 EGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIVPAEVVEALL 249

Query: 249 RNVIEGNFDEACTGLKQLYDLGYSPTDIITTLFR-IIKNYDMAEYMKLEFMKETGFAHMR 307
           +    GNFD A   +      GY  + ++T LF  I++  D+++  K    K+ G A   
Sbjct: 250 KACRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKARISKKLGEADKC 309

Query: 308 ICDGVGSYLQLCGLLA 323
           + DG   YLQL  +++
Sbjct: 310 LVDGADEYLQLLDVVS 325


>Medtr3g088380.2 | replication factor C subunit 2 | HC |
           chr3:40162519-40157119 | 20130731
          Length = 339

 Score =  220 bits (560), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/316 (39%), Positives = 182/316 (57%), Gaps = 10/316 (3%)

Query: 18  PWVEKYRPSKVADIVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 77
           PWVEKYRP +V D+   ++ V  L      G+ P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 78  NC-KEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTT 129
              K  VLELNASDDRGI+VVR KIK FA       + K   P   +KI++LDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIVLDEADSMTE 129

Query: 130 GAQQALRRTIEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVKA 189
            AQ ALRRT+E YS  TRF   CN  ++IIEP+ SRCA  RF  L+++ +  R++ + K 
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRIVYICKE 189

Query: 190 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-QFVNQANVFKVCDQPHPLHVKNMV 248
           E +    EGL  +   + GD+R+A+  LQ+    F   ++  ++  V        V+ ++
Sbjct: 190 EGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIVPAEVVEALL 249

Query: 249 RNVIEGNFDEACTGLKQLYDLGYSPTDIITTLFR-IIKNYDMAEYMKLEFMKETGFAHMR 307
           +    GNFD A   +      GY  + ++T LF  I++  D+++  K    K+ G A   
Sbjct: 250 KACRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKARISKKLGEADKC 309

Query: 308 ICDGVGSYLQLCGLLA 323
           + DG   YLQL  +++
Sbjct: 310 LVDGADEYLQLLDVVS 325


>Medtr3g088120.1 | replication factor C subunit 5 | HC |
           chr3:39964069-39957680 | 20130731
          Length = 355

 Score =  211 bits (536), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 118/314 (37%), Positives = 182/314 (57%), Gaps = 11/314 (3%)

Query: 19  WVEKYRPSKVADIVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 78
           WVEKYRP  + D+  ++D V  +  +  +  +P+L+L GPPGTGKT++ILA+A +L G  
Sbjct: 34  WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 93

Query: 79  CKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH---KIVILDEADSMTTGAQQAL 135
               +LELNASDDRGIDVVR +I+ FA  + +L  G     K+V+LDEAD+MT  AQ AL
Sbjct: 94  YHNMILELNASDDRGIDVVRQQIQDFASTQ-SLSFGVKPSVKLVLLDEADAMTKDAQFAL 152

Query: 136 RRTIEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVKAEKVPYV 195
           RR IE Y+ +TRFAL CN   KII  +QSRC   RF+ L    +  RL  V+ AE++   
Sbjct: 153 RRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERLDVQ 212

Query: 196 PEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGN 255
             GL A++  ++GDMR+ALN LQ+T+   Q + +  V+     P P  ++ +   ++   
Sbjct: 213 DSGLSALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQ 272

Query: 256 FDEACTGLKQLYDL----GYSPTDIITTLFRIIKNYDMAEYMKLEFMKETGFAHMRICDG 311
           + E+    K++YD+    G +  DI+  +   +   +M   ++++ + +      R+  G
Sbjct: 273 YSES---FKRIYDMKTRKGLALIDIVREVTMFVFKINMPSAVRVQLVNDLADIEYRLSFG 329

Query: 312 VGSYLQLCGLLAKL 325
               LQL  ++A  
Sbjct: 330 CNDKLQLGSVVASF 343


>Medtr3g088120.2 | replication factor C subunit 5 | HC |
           chr3:39964069-39959228 | 20130731
          Length = 300

 Score =  203 bits (516), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/266 (41%), Positives = 163/266 (61%), Gaps = 11/266 (4%)

Query: 19  WVEKYRPSKVADIVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 78
           WVEKYRP  + D+  ++D V  +  +  +  +P+L+L GPPGTGKT++ILA+A +L G  
Sbjct: 34  WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 93

Query: 79  CKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH---KIVILDEADSMTTGAQQAL 135
               +LELNASDDRGIDVVR +I+ FA  + +L  G     K+V+LDEAD+MT  AQ AL
Sbjct: 94  YHNMILELNASDDRGIDVVRQQIQDFASTQ-SLSFGVKPSVKLVLLDEADAMTKDAQFAL 152

Query: 136 RRTIEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVKAEKVPYV 195
           RR IE Y+ +TRFAL CN   KII  +QSRC   RF+ L    +  RL  V+ AE++   
Sbjct: 153 RRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERLDVQ 212

Query: 196 PEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGN 255
             GL A++  ++GDMR+ALN LQ+T+   Q + +  V+     P P  ++ +   ++   
Sbjct: 213 DSGLSALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQ 272

Query: 256 FDEACTGLKQLYDL----GYSPTDII 277
           + E+    K++YD+    G +  DI+
Sbjct: 273 YSES---FKRIYDMKTRKGLALIDIV 295


>Medtr4g102700.1 | replication factor C subunit | HC |
           chr4:42565152-42566589 | 20130731
          Length = 150

 Score =  159 bits (402), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 90/147 (61%), Positives = 103/147 (70%), Gaps = 19/147 (12%)

Query: 127 MTTGAQQALRRTIEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMIV 186
           MT+GAQQALRRT+EIYSN+T FALA NTS+KIIEPIQSRCAIVRFSRLSDQEILGRLM+V
Sbjct: 1   MTSGAQQALRRTMEIYSNSTHFALASNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVV 60

Query: 187 VKAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKN 246
           V+AEKV      L+   F        A+N  +    G +   +            +   N
Sbjct: 61  VQAEKV-----RLDIYSFP------MAINPTEGGGEGGREGGRERGL--------VDSVN 101

Query: 247 MVRNVIEGNFDEACTGLKQLYDLGYSP 273
           MVRNVIEGNFDEAC+GLKQLYDLGYSP
Sbjct: 102 MVRNVIEGNFDEACSGLKQLYDLGYSP 128


>Medtr6g027590.1 | DNA replication factor C complex subunit 3 | HC |
           chr6:9558620-9564430 | 20130731
          Length = 354

 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 117/228 (51%), Gaps = 33/228 (14%)

Query: 19  WVEKYRPSKVADIVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 78
           WV+KYRP  + + + + D    L+ +  + + P+L+  GP G+GK T I+AL  ++ GP 
Sbjct: 3   WVDKYRPKTLDNALVHNDTAQNLKKLVSEHDCPHLLFYGPSGSGKKTLIMALLRQMFGPG 62

Query: 79  CKEAVLELNA----SDDRGID-------------------------VVRNKIKMFAQKKV 109
            ++  +E  A    +  R ID                         +V+  IK  A+ + 
Sbjct: 63  AEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRP 122

Query: 110 TLPPGRH--KIVILDEADSMTTGAQQALRRTIEIYSNTTRFALACNTSAKIIEPIQSRCA 167
               G+   K+++L++ D ++  AQ +LRRT+E YS   R  L CN+S+++ E I+SRC 
Sbjct: 123 IDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCL 182

Query: 168 IVRFSRLSDQEILGRLMIVVKAEKVPYVPEGLEA-IIFTADGDMRQAL 214
            VR +  S+++I+  L  + K E +  +P    A I   ++ ++R+A+
Sbjct: 183 NVRINAPSEEQIVEVLQFIGKKEGLQ-LPSSFAARIAEKSNRNLRRAI 229


>Medtr6g471010.1 | DNA replication factor C complex subunit 3 | HC |
           chr6:25412156-25405812 | 20130731
          Length = 354

 Score =  101 bits (252), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 33/228 (14%)

Query: 19  WVEKYRPSKVADIVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 78
           WV+KYRP  +   + + D    L+ +  + + P+L+  GP G GK T I+AL  ++ GP 
Sbjct: 3   WVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPG 62

Query: 79  CKEAVLELNA----SDDRGID-------------------------VVRNKIKMFAQKKV 109
            ++  +E  A    +  R ID                         +V+  IK  A+ + 
Sbjct: 63  AEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRP 122

Query: 110 TLPPGRH--KIVILDEADSMTTGAQQALRRTIEIYSNTTRFALACNTSAKIIEPIQSRCA 167
               G+   K+++L++ D ++  AQ +LRRT+E YS   R  L CN+S+++ E I+SRC 
Sbjct: 123 IDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSRCL 182

Query: 168 IVRFSRLSDQEILGRLMIVVKAEKVPYVPEGLEA-IIFTADGDMRQAL 214
            VR +  S+++I+  L  + K E +  +P  L A I   ++ ++R+A+
Sbjct: 183 NVRINAPSEEQIVEVLQFIGKKEGLQ-LPSSLAARIAEKSNRNLRRAI 229


>Medtr6g471010.2 | DNA replication factor C complex subunit 3 | HC |
           chr6:25412144-25405881 | 20130731
          Length = 354

 Score =  101 bits (252), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 33/228 (14%)

Query: 19  WVEKYRPSKVADIVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 78
           WV+KYRP  +   + + D    L+ +  + + P+L+  GP G GK T I+AL  ++ GP 
Sbjct: 3   WVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPG 62

Query: 79  CKEAVLELNA----SDDRGID-------------------------VVRNKIKMFAQKKV 109
            ++  +E  A    +  R ID                         +V+  IK  A+ + 
Sbjct: 63  AEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRP 122

Query: 110 TLPPGRH--KIVILDEADSMTTGAQQALRRTIEIYSNTTRFALACNTSAKIIEPIQSRCA 167
               G+   K+++L++ D ++  AQ +LRRT+E YS   R  L CN+S+++ E I+SRC 
Sbjct: 123 IDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSRCL 182

Query: 168 IVRFSRLSDQEILGRLMIVVKAEKVPYVPEGLEA-IIFTADGDMRQAL 214
            VR +  S+++I+  L  + K E +  +P  L A I   ++ ++R+A+
Sbjct: 183 NVRINAPSEEQIVEVLQFIGKKEGLQ-LPSSLAARIAEKSNRNLRRAI 229


>Medtr3g118160.1 | replication factor C subunit, putative | HC |
           chr3:55299989-55307292 | 20130731
          Length = 800

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 126/273 (46%), Gaps = 41/273 (15%)

Query: 15  YDVPWVEKYRPSKVADIVGNQDAVSRLQVIARDGNMPN-LILSGPPGTGKTTSILALAHE 73
           Y+  W  KY+P  +AD + N+D   +L+ + + G   N  I  GPP  GK + I A+  E
Sbjct: 418 YEYLWATKYQPKILADFICNRDKALQLKALVKGGCGCNHFIFEGPPNVGKRSMIRAMLRE 477

Query: 74  LLGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKV------------------------ 109
           + G +  +   E    + +G ++V N +K+  QK +                        
Sbjct: 478 VFGADGVQVTEEYKDFNLKG-EMVEN-LKLRVQKSLHHVEVNLSEAKGYEKNVIVELFKE 535

Query: 110 --------TLP--PGRHKIVILDEADSMTTGAQQALRRTIEIYSNTTRFALACNTSAKII 159
                   +LP  P   + +IL EA+ ++  +   ++  +E Y    +    C+  +++ 
Sbjct: 536 TYGKVINSSLPCSPENCQAIILYEAEKLSLESVLYIKWLVEKYKGCNKLFFCCSDESRL- 594

Query: 160 EPIQSRCAIVRFSRLSDQEILGRLMIVVKAEKVPYVPEGLEAIIFTADGDMRQALNNLQA 219
           +PIQS C  VR S  S Q+I+  L  +V+ E +    E +++I+  +  ++RQA+ +L+A
Sbjct: 595 QPIQSYCTTVRLSSPSTQQIVKILEYIVQEEGIKLSHESIKSIVLRSKNNLRQAIRSLEA 654

Query: 220 TYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVI 252
           TY     +N  ++     +   L   N+ RN+I
Sbjct: 655 TYRNKNALNDDDLVLTGWEDDIL---NIARNII 684


>Medtr4g050180.1 | replication factor C1 | HC |
           chr4:17764475-17754850 | 20130731
          Length = 988

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 48/240 (20%)

Query: 19  WVEKYRPSKVADIVGNQDAVSRLQVI-------------ARDGNMPN-------LILSGP 58
           W EK+RP    DI+GNQ  V++L+                + G   N       ++LSG 
Sbjct: 375 WTEKHRPKNPKDIIGNQSLVAQLRTWLKGWHEQFSNTGGNKKGKKQNDPASKKAVLLSGT 434

Query: 59  PGTGKTTSILALAHELLGPNCKEAVLELNASDDRGIDVVR----------NKIKMFAQKK 108
           PG GKTTS   +  EL         +E+NASD RG    +          N IK     +
Sbjct: 435 PGIGKTTSAKLVCQEL-----GFQAIEVNASDSRGKADSKIEKGISGSNANSIKELVTNE 489

Query: 109 VTLPPGRH--------KIVILDEADSMTTGAQQALRRTIEIYSNTTRFALACNTS--AKI 158
                GR+         ++I+DE D M+ G +  +   I     +    +       ++ 
Sbjct: 490 AL---GRNMDRSKQSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQK 546

Query: 159 IEPIQSRCAIVRFSRLSDQEILGRLMIVVKAEKVPYVPEGLEAIIFTADGDMRQALNNLQ 218
           ++ + + C ++ + + + Q++  + M V KAE +      LE +    +GDMR ALN LQ
Sbjct: 547 LKSLMNYCLLLSYRKPTKQQMAKKFMEVAKAEGLQVNEIALEELAERVNGDMRMALNQLQ 606


>Medtr4g050180.2 | replication factor C1 | HC |
           chr4:17764874-17754850 | 20130731
          Length = 1016

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 48/240 (20%)

Query: 19  WVEKYRPSKVADIVGNQDAVSRLQVI-------------ARDGNMPN-------LILSGP 58
           W EK+RP    DI+GNQ  V++L+                + G   N       ++LSG 
Sbjct: 404 WTEKHRPKNPKDIIGNQSLVAQLRTWLKGWHEQFSNTGGNKKGKKQNDPASKKAVLLSGT 463

Query: 59  PGTGKTTSILALAHELLGPNCKEAVLELNASDDRGIDVVR----------NKIKMFAQKK 108
           PG GKTTS   +  EL         +E+NASD RG    +          N IK     +
Sbjct: 464 PGIGKTTSAKLVCQEL-----GFQAIEVNASDSRGKADSKIEKGISGSNANSIKELVTNE 518

Query: 109 VTLPPGRH--------KIVILDEADSMTTGAQQALRRTIEIYSNTTRFALACNTS--AKI 158
                GR+         ++I+DE D M+ G +  +   I     +    +       ++ 
Sbjct: 519 AL---GRNMDRSKQSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQK 575

Query: 159 IEPIQSRCAIVRFSRLSDQEILGRLMIVVKAEKVPYVPEGLEAIIFTADGDMRQALNNLQ 218
           ++ + + C ++ + + + Q++  + M V KAE +      LE +    +GDMR ALN LQ
Sbjct: 576 LKSLMNYCLLLSYRKPTKQQMAKKFMEVAKAEGLQVNEIALEELAERVNGDMRMALNQLQ 635


>Medtr4g134530.1 | DNA polymerase III subunit gamma/tau | HC |
           chr4:56342192-56348822 | 20130731
          Length = 1203

 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 20/218 (9%)

Query: 21  EKYRPSKVADIVGNQDAVSRL-QVIARDGNMPNLILSGPPGTGKTTS--ILALAHELLGP 77
            KY+P    +++G    V  L   ++R    P  +  GP GTGKT++  I A A   +  
Sbjct: 429 HKYKPLFFGELIGQTIVVHSLVNAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVAS 488

Query: 78  N-------CKEA----------VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVI 120
           +       C E           ++E++ ++ +GID  R  +K  A    +    R+ + +
Sbjct: 489 DEGKPCGYCGECADFVSGKSCDLVEVDGTNKKGIDKARYLLKRLAAGSSSAASSRYTVFV 548

Query: 121 LDEADSMTTGAQQALRRTIEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEIL 180
           +DE   +T+       + +E       F    +    +   IQSRC    F+++ D +I+
Sbjct: 549 IDECHLLTSKTWLGFLKFLEAPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIV 608

Query: 181 GRLMIVVKAEKVPYVPEGLEAIIFTADGDMRQALNNLQ 218
            RL  +   E +    + L+ I   ADG +R A   L+
Sbjct: 609 TRLRKISTQENLDVETDALDLIALNADGSLRDAETMLE 646


>Medtr4g104350.2 | DNA polymerase III subunit gamma/tau | HC |
           chr4:43113918-43109005 | 20130731
          Length = 936

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 18/210 (8%)

Query: 22  KYRPSKVADIVG-NQDAVSRLQVIARDGNMPNLILSGPPGTGKTTS--ILALAHELLGPN 78
           K+RP    D+VG N    S    I+R       +  GP GTGKT++  I A A   +   
Sbjct: 283 KFRPKSFNDLVGQNMVGKSLSGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNCISLE 342

Query: 79  -------CKEAVLELN--ASDDRGIDVVR----NKIKMFAQKKVTLPP--GRHKIVILDE 123
                  C E VL  +  + D + +D +R    +K K   +   T  P   R+K+ I+DE
Sbjct: 343 ERRPCGLCSECVLFFSGRSKDVKEVDSLRINRPDKAKSLVKNACTTAPFSSRYKVFIIDE 402

Query: 124 ADSMTTGAQQALRRTIEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRL 183
              +       L  ++ ++S    F +      K+     SR     F+++ D +I  RL
Sbjct: 403 CQLLNKETWATLLNSLGVFSQHVVFVMITPDLEKLPRSAISRAQRYHFTKIKDADIASRL 462

Query: 184 MIVVKAEKVPYVPEGLEAIIFTADGDMRQA 213
             +   E +    + L+ I   + G +R A
Sbjct: 463 KRICVEEGLESEQDALDFIAAKSCGSLRDA 492


>Medtr4g104350.1 | DNA polymerase III subunit gamma/tau | HC |
           chr4:43113306-43108849 | 20130731
          Length = 935

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 18/210 (8%)

Query: 22  KYRPSKVADIVGNQDAVSRLQVIARDGNMPNLIL-SGPPGTGKTTS--ILALAHELLGPN 78
           K+RP    D+VG       L      G + +  L  GP GTGKT++  I A A   +   
Sbjct: 283 KFRPKSFNDLVGQNMVGKSLSGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNCISLE 342

Query: 79  -------CKEAVLELN--ASDDRGIDVVR----NKIKMFAQKKVTLPP--GRHKIVILDE 123
                  C E VL  +  + D + +D +R    +K K   +   T  P   R+K+ I+DE
Sbjct: 343 ERRPCGLCSECVLFFSGRSKDVKEVDSLRINRPDKAKSLVKNACTTAPFSSRYKVFIIDE 402

Query: 124 ADSMTTGAQQALRRTIEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRL 183
              +       L  ++ ++S    F +      K+     SR     F+++ D +I  RL
Sbjct: 403 CQLLNKETWATLLNSLGVFSQHVVFVMITPDLEKLPRSAISRAQRYHFTKIKDADIASRL 462

Query: 184 MIVVKAEKVPYVPEGLEAIIFTADGDMRQA 213
             +   E +    + L+ I   + G +R A
Sbjct: 463 KRICVEEGLESEQDALDFIAAKSCGSLRDA 492


>Medtr5g098850.1 | AAA family ATPase | HC | chr5:43286117-43283972 |
           20130731
          Length = 551

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 29/224 (12%)

Query: 18  PWVEKYRPSKVADIVGNQDAVSRLQVIARDG----NMPNLILSGPPGTGKTTSILALAHE 73
           P  E+ RP  + ++VG QD +     I R       +P+++L GPPGTGKTT   A+ + 
Sbjct: 115 PLYERLRPRTLDEVVG-QDHLLSTNSILRSSIQRKRLPSILLWGPPGTGKTTIAKAIVNS 173

Query: 74  LLGPNCKEAVL----ELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTT 129
                 K++ L     L+A    G+  VR  +     +KV +   +  ++ +DE      
Sbjct: 174 --SSTTKDSPLYRFVSLSAVTS-GVKDVREAVD--EARKVRVKTNQTTVLFVDEVHRFNK 228

Query: 130 GAQQALRRTIEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVKA 189
             Q +    IE  S     A   N S  +I P+ SRC ++  + L    ++  L   V  
Sbjct: 229 SQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLILLLKRAVND 288

Query: 190 EKVPYVPE------------GLEAIIFTA---DGDMRQALNNLQ 218
            +   V              G + + F A   DGD R ALN L+
Sbjct: 289 TEKGLVKSLGFGSCKVDVSVGEDVVDFVANNCDGDARVALNVLE 332


>Medtr1g047790.1 | chromosome transmission fidelity protein | HC |
           chr1:18064972-18083135 | 20130731
          Length = 985

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 53  LILSGPPGTGKTTSILALAHELLGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLP 112
           L+L GPPG GKTT    LAH +   +C   V+E+NASDDR    +  KI    Q    L 
Sbjct: 355 LLLCGPPGLGKTT----LAH-VAARHCGYHVVEVNASDDRSTSTIEAKILDVVQMNSVLS 409

Query: 113 PGRHKIVILDEAD 125
             + K +++DE D
Sbjct: 410 DSKPKCLVVDEID 422