Miyakogusa Predicted Gene

Lj4g3v1345770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1345770.1 tr|G7IAZ6|G7IAZ6_MEDTR Survival of motor neuron
protein-interacting protein OS=Medicago truncatula
G,41.71,2e-18,seg,NULL;
coiled-coil,NULL,NODE_82077_length_658_cov_37.095745.path1.1
         (203 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g116530.1 | survival motor neuron interacting protein | HC...    82   3e-16
Medtr6g086905.1 | spliceosome-like protein, putative | HC | chr6...    70   1e-12

>Medtr1g116530.1 | survival motor neuron interacting protein | HC |
           chr1:52721123-52724180 | 20130731
          Length = 521

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 67/135 (49%), Gaps = 28/135 (20%)

Query: 76  SLGLG-IEVIDETALLETIPRKITTAASKNARRRAXXXXXXXXXXXXQIRHHKKTVTAEE 134
           SLG   IEVIDETALL+ IP         N + R                  KK      
Sbjct: 80  SLGFSNIEVIDETALLDCIP-------INNGKPRRNPS--------------KKINKNNT 118

Query: 135 IPVLRNSEAKGGKYSRKDMMALRFVNVAGQRRFWKTIYANLESGVAQEYDTLAV------ 188
           +   R +     KYSR+ M ++RFVNV+ Q +FWKTIY  L+S  A EYDTL V      
Sbjct: 119 VAPPRTTGTDKKKYSREMMESMRFVNVSQQLKFWKTIYTALQSAFADEYDTLVVAATAHN 178

Query: 189 NVHHLPCLPNKKPIL 203
           N H LP  PNKKPIL
Sbjct: 179 NRHSLPFHPNKKPIL 193


>Medtr6g086905.1 | spliceosome-like protein, putative | HC |
           chr6:32822628-32823143 | 20130731
          Length = 171

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 61/122 (50%), Gaps = 27/122 (22%)

Query: 77  LGLGI---EVIDETALLETIPRKITTAASKNARRRAXXXXXXXXXXXXQIRHHKKTV--- 130
           LG GI   E+IDET LL++ P        K + RRA              + HK T+   
Sbjct: 59  LGFGIPKIEIIDETILLDSFP-----VNRKQSNRRASK------------KIHKNTLPLT 101

Query: 131 TAEEIPVLRNSE----AKGGKYSRKDMMALRFVNVAGQRRFWKTIYANLESGVAQEYDTL 186
             EE+    NS+     K  KYSR+ M A RFVNV  Q +FW  IYA L+S  A +YDTL
Sbjct: 102 VTEELVAAENSDESERGKKKKYSREVMEATRFVNVPEQCKFWNRIYAALQSSFADDYDTL 161

Query: 187 AV 188
            V
Sbjct: 162 VV 163