Miyakogusa Predicted Gene

Lj4g3v1329880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1329880.1 Non Characterized Hit- tr|I1M541|I1M541_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.41995 PE,88.86,0,ATPase
domain of HSP90 chaperone/DNA topoisomerase II/histidine
kinase,ATPase-like, ATP-binding doma,CUFF.48942.1
         (376 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g098510.1 | DNA topoisomerase VI, B subunit | HC | chr2:42...   639   0.0  
Medtr2g098510.2 | DNA topoisomerase VI, B subunit | HC | chr2:42...   452   e-127

>Medtr2g098510.1 | DNA topoisomerase VI, B subunit | HC |
           chr2:42150825-42142481 | 20130731
          Length = 671

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/342 (88%), Positives = 319/342 (93%)

Query: 27  ETILKQKSPAEFFAENKNIAGFDNAGKSLYTTVRELVENSLDSAESISVLPVVEVTIEEI 86
           ET+LKQKSPAEFFAENKNIAGFDN GKSLYTTVRELVEN+LDSAESIS LPVVE+TIEEI
Sbjct: 24  ETVLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAESISELPVVEITIEEI 83

Query: 87  NRSKFNSMIGLVDRERVDAALYDDYETXXXXXXXXXXXXXXQEIQAKNASLGKKGKEASA 146
            +SKFNSMIGLVDRERVDAALYDD+ET              QE+QAKNA+LGKK K+  A
Sbjct: 84  IKSKFNSMIGLVDRERVDAALYDDFETAKAREKRLAKEARAQELQAKNAALGKKVKDTPA 143

Query: 147 TKGIKGRGEASFYRVTCKDNGKGMPHDDIPDMFGRVLSGTKYGLKQTRGKFGLGAKMALI 206
           +KG+KGRGEASFYRVTCKDNGKGMPHDDIP+MFGRVLSGTKYGLKQTRGKFGLGAKMALI
Sbjct: 144 SKGMKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALI 203

Query: 207 WSKMSTGLPIEISSSMRKQNYISFCRLDIDIHKNIPHVHLHEKRENNEHWHGAEIQVVIE 266
           WSKMSTGLPIEISSSM+KQNYISFCRLDIDIHKNIPHVHLHEKRENN++WHGAEIQVVIE
Sbjct: 204 WSKMSTGLPIEISSSMKKQNYISFCRLDIDIHKNIPHVHLHEKRENNQNWHGAEIQVVIE 263

Query: 267 GNWTTYRSKILHYMRQMAVITPYAQFVFKFMSDAPDKNVTVSFARRTDVMPPIPLETKHH 326
           GNWTTYRSKILHYMRQMAVITPYAQF FKF+SDAPDKNVTV FARRTDVMPPIPLETKHH
Sbjct: 264 GNWTTYRSKILHYMRQMAVITPYAQFQFKFVSDAPDKNVTVRFARRTDVMPPIPLETKHH 323

Query: 327 PSSVDLLLIKRLIAETSKQNLVQFLQHEFVNISKPYAERLIG 368
           PSSVDLLLIKRLI ETSKQNL+QFLQHEFVNISKP+AERLIG
Sbjct: 324 PSSVDLLLIKRLITETSKQNLLQFLQHEFVNISKPHAERLIG 365


>Medtr2g098510.2 | DNA topoisomerase VI, B subunit | HC |
           chr2:42148392-42142481 | 20130731
          Length = 525

 Score =  452 bits (1163), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 208/219 (94%), Positives = 216/219 (98%)

Query: 150 IKGRGEASFYRVTCKDNGKGMPHDDIPDMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSK 209
           +KGRGEASFYRVTCKDNGKGMPHDDIP+MFGRVLSGTKYGLKQTRGKFGLGAKMALIWSK
Sbjct: 1   MKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSK 60

Query: 210 MSTGLPIEISSSMRKQNYISFCRLDIDIHKNIPHVHLHEKRENNEHWHGAEIQVVIEGNW 269
           MSTGLPIEISSSM+KQNYISFCRLDIDIHKNIPHVHLHEKRENN++WHGAEIQVVIEGNW
Sbjct: 61  MSTGLPIEISSSMKKQNYISFCRLDIDIHKNIPHVHLHEKRENNQNWHGAEIQVVIEGNW 120

Query: 270 TTYRSKILHYMRQMAVITPYAQFVFKFMSDAPDKNVTVSFARRTDVMPPIPLETKHHPSS 329
           TTYRSKILHYMRQMAVITPYAQF FKF+SDAPDKNVTV FARRTDVMPPIPLETKHHPSS
Sbjct: 121 TTYRSKILHYMRQMAVITPYAQFQFKFVSDAPDKNVTVRFARRTDVMPPIPLETKHHPSS 180

Query: 330 VDLLLIKRLIAETSKQNLVQFLQHEFVNISKPYAERLIG 368
           VDLLLIKRLI ETSKQNL+QFLQHEFVNISKP+AERLIG
Sbjct: 181 VDLLLIKRLITETSKQNLLQFLQHEFVNISKPHAERLIG 219