Miyakogusa Predicted Gene

Lj4g3v1328820.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1328820.2 Non Characterized Hit- tr|B8ALW2|B8ALW2_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,75,8e-18,Thiolase-like,Thiolase-like;
HMG_CoA_synt_C,Hydroxymethylglutaryl-coenzyme A synthase C-terminal;
HM,CUFF.48933.2
         (460 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g011040.1 | 3-hydroxy-3-methylglutaryl coenzyme A synthase...   816   0.0  
Medtr6g089570.1 | 3-hydroxy-3-methylglutaryl coenzyme A synthase...   778   0.0  
Medtr5g011040.2 | 3-hydroxy-3-methylglutaryl coenzyme A synthase...   719   0.0  

>Medtr5g011040.1 | 3-hydroxy-3-methylglutaryl coenzyme A synthase |
           HC | chr5:3104283-3109011 | 20130731
          Length = 471

 Score =  816 bits (2108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/466 (83%), Positives = 423/466 (90%), Gaps = 7/466 (1%)

Query: 2   AKNVGILAIDVYFPSTCVQQEALEAHDGASKGKYTIGLGQDCMAFCTDIEDVISMSLTVV 61
           A NVGILA+D+YFP  CVQQEALEAHDGASKGKYTIGLGQDCM+FC+D+EDVISMSLTVV
Sbjct: 6   ANNVGILALDIYFPPNCVQQEALEAHDGASKGKYTIGLGQDCMSFCSDVEDVISMSLTVV 65

Query: 62  TSLLEKYGIDPKLIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 121
           ++LL+KY IDPK IGRLEVGSETVIDKSKSIK+FLMQIFEKYGNTDIEGVDSTNACYGGT
Sbjct: 66  STLLQKYEIDPKQIGRLEVGSETVIDKSKSIKSFLMQIFEKYGNTDIEGVDSTNACYGGT 125

Query: 122 AALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKL 181
           AALFNCVNWVES+SWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPI+FESKL
Sbjct: 126 AALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKL 185

Query: 182 RASYMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDNCYKSLSLKYEKFEGKPFSLADA 241
           R S+M+H YDFYKP+LASEYPVVDGKLSQTCYLMALD C+K+   KYEK EGK FSL+DA
Sbjct: 186 RGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDTCFKNFCQKYEKHEGKQFSLSDA 245

Query: 242 EYFVFHSPYNKLVQKSFARLVFNDFLKNTSFVDEAAKEKLGPFATLSGDESYQSRDLEKA 301
           +YFVFHSPYNKLVQKSFARLVF+DFL+N S  DE   EKLGPF TLS DESYQSRDLEKA
Sbjct: 246 DYFVFHSPYNKLVQKSFARLVFSDFLRNPSSKDEVTNEKLGPFTTLSDDESYQSRDLEKA 305

Query: 302 SQQVAKPQYDAKVQPTTLLPKQVGNMYTASLYAAFVSLIHNKHSTLAGKRVILFSYGSGL 361
           SQQVAKP YD KVQP+TL+PKQVGNMYTAS+YAAF SL+HNK+S+L GKRVILFSYGSGL
Sbjct: 306 SQQVAKPLYDEKVQPSTLIPKQVGNMYTASIYAAFASLLHNKNSSLEGKRVILFSYGSGL 365

Query: 362 TATMFSLQLRDGKHPFSLSNIATVMDVAGKLKSRKEFPPEKFVEIMKLMEHRYGSKEYVT 421
           TATMFSLQLR+ KHPFSLSNIA VMDVA KLKSR EFPP+KF+E +KLMEHRYG+K+YVT
Sbjct: 366 TATMFSLQLRETKHPFSLSNIARVMDVAEKLKSRHEFPPQKFIETLKLMEHRYGAKDYVT 425

Query: 422 SKETSLLSSGTFYLTEVDNMYRRFYEQKTSES-------ALSANGH 460
           SK++SLL+ GTFYLTEVD MYRRFY  K+SES        LS NGH
Sbjct: 426 SKDSSLLAPGTFYLTEVDTMYRRFYTTKSSESNLTPAVNGLSVNGH 471


>Medtr6g089570.1 | 3-hydroxy-3-methylglutaryl coenzyme A synthase |
           HC | chr6:22746750-22740317 | 20130731
          Length = 459

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/446 (80%), Positives = 406/446 (91%)

Query: 4   NVGILAIDVYFPSTCVQQEALEAHDGASKGKYTIGLGQDCMAFCTDIEDVISMSLTVVTS 63
           NVGILAID+YFP TCVQQEALEAHDG SKGKYTIGLGQDCMAFCT++ED+ISMS+TVV+S
Sbjct: 8   NVGILAIDIYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTEVEDIISMSMTVVSS 67

Query: 64  LLEKYGIDPKLIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 123
           LLEKY IDPK IGRLEVGSET+IDKSKSIKTFLMQIFE  GNTDIEGVDSTNACYGGTAA
Sbjct: 68  LLEKYNIDPKKIGRLEVGSETMIDKSKSIKTFLMQIFEDSGNTDIEGVDSTNACYGGTAA 127

Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKLRA 183
           LFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAML+GPDAPIAFESKLR 
Sbjct: 128 LFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPIAFESKLRG 187

Query: 184 SYMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDNCYKSLSLKYEKFEGKPFSLADAEY 243
           S+MSHAYDFYKPNLASEYPVVDGKLSQTCYLMALD+CY+    K+EK EGK FS+AD++Y
Sbjct: 188 SHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYRVFCEKFEKSEGKHFSMADSDY 247

Query: 244 FVFHSPYNKLVQKSFARLVFNDFLKNTSFVDEAAKEKLGPFATLSGDESYQSRDLEKASQ 303
           FVFHSPYNKLVQKSF RL FNDFL+N SFVDE +++ L P+A+L+GDESYQSRDLEKA+Q
Sbjct: 248 FVFHSPYNKLVQKSFGRLYFNDFLRNPSFVDEVSRQALAPYASLTGDESYQSRDLEKANQ 307

Query: 304 QVAKPQYDAKVQPTTLLPKQVGNMYTASLYAAFVSLIHNKHSTLAGKRVILFSYGSGLTA 363
           Q AK  YDAKVQP+TL+PKQVGNMYTASLYAAF SL+HNKH +L GKRV++FSYGSGLT+
Sbjct: 308 QAAKKIYDAKVQPSTLIPKQVGNMYTASLYAAFASLLHNKHDSLVGKRVVMFSYGSGLTS 367

Query: 364 TMFSLQLRDGKHPFSLSNIATVMDVAGKLKSRKEFPPEKFVEIMKLMEHRYGSKEYVTSK 423
           TMFS +L++G+HPF+LSNI TVM+V+GKLK R E PPEKFVE  K+MEH YG KE+VT +
Sbjct: 368 TMFSFRLQEGQHPFNLSNIVTVMNVSGKLKQRIELPPEKFVENTKIMEHHYGGKEFVTGQ 427

Query: 424 ETSLLSSGTFYLTEVDNMYRRFYEQK 449
           + + L  GTF+LT+VD+MYRRFY +K
Sbjct: 428 DCNYLLPGTFFLTKVDSMYRRFYAKK 453


>Medtr5g011040.2 | 3-hydroxy-3-methylglutaryl coenzyme A synthase |
           HC | chr5:3104361-3108361 | 20130731
          Length = 427

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/396 (85%), Positives = 367/396 (92%)

Query: 2   AKNVGILAIDVYFPSTCVQQEALEAHDGASKGKYTIGLGQDCMAFCTDIEDVISMSLTVV 61
           A NVGILA+D+YFP  CVQQEALEAHDGASKGKYTIGLGQDCM+FC+D+EDVISMSLTVV
Sbjct: 6   ANNVGILALDIYFPPNCVQQEALEAHDGASKGKYTIGLGQDCMSFCSDVEDVISMSLTVV 65

Query: 62  TSLLEKYGIDPKLIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 121
           ++LL+KY IDPK IGRLEVGSETVIDKSKSIK+FLMQIFEKYGNTDIEGVDSTNACYGGT
Sbjct: 66  STLLQKYEIDPKQIGRLEVGSETVIDKSKSIKSFLMQIFEKYGNTDIEGVDSTNACYGGT 125

Query: 122 AALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKL 181
           AALFNCVNWVES+SWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPI+FESKL
Sbjct: 126 AALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKL 185

Query: 182 RASYMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDNCYKSLSLKYEKFEGKPFSLADA 241
           R S+M+H YDFYKP+LASEYPVVDGKLSQTCYLMALD C+K+   KYEK EGK FSL+DA
Sbjct: 186 RGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDTCFKNFCQKYEKHEGKQFSLSDA 245

Query: 242 EYFVFHSPYNKLVQKSFARLVFNDFLKNTSFVDEAAKEKLGPFATLSGDESYQSRDLEKA 301
           +YFVFHSPYNKLVQKSFARLVF+DFL+N S  DE   EKLGPF TLS DESYQSRDLEKA
Sbjct: 246 DYFVFHSPYNKLVQKSFARLVFSDFLRNPSSKDEVTNEKLGPFTTLSDDESYQSRDLEKA 305

Query: 302 SQQVAKPQYDAKVQPTTLLPKQVGNMYTASLYAAFVSLIHNKHSTLAGKRVILFSYGSGL 361
           SQQVAKP YD KVQP+TL+PKQVGNMYTAS+YAAF SL+HNK+S+L GKRVILFSYGSGL
Sbjct: 306 SQQVAKPLYDEKVQPSTLIPKQVGNMYTASIYAAFASLLHNKNSSLEGKRVILFSYGSGL 365

Query: 362 TATMFSLQLRDGKHPFSLSNIATVMDVAGKLKSRKE 397
           TATMFSLQLR+ KHPFSLSNIA VMDVA KLKSR E
Sbjct: 366 TATMFSLQLRETKHPFSLSNIARVMDVAEKLKSRHE 401