Miyakogusa Predicted Gene

Lj4g3v1328820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1328820.1 tr|I0Z4X8|I0Z4X8_9CHLO Hydroxymethylglutaryl-CoA
synthase OS=Coccomyxa subellipsoidea C-169 PE=4
SV=,42.86,4e-19,SUBFAMILY NOT NAMED,NULL; HYDROXYMETHYLGLUTARYL-COA
SYNTHASE,NULL; Thiolase-like,Thiolase-like; HMG_,CUFF.48933.1
         (134 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g011040.1 | 3-hydroxy-3-methylglutaryl coenzyme A synthase...   221   2e-58
Medtr6g089570.1 | 3-hydroxy-3-methylglutaryl coenzyme A synthase...   187   2e-48
Medtr5g011040.2 | 3-hydroxy-3-methylglutaryl coenzyme A synthase...   123   5e-29

>Medtr5g011040.1 | 3-hydroxy-3-methylglutaryl coenzyme A synthase |
           HC | chr5:3104283-3109011 | 20130731
          Length = 471

 Score =  221 bits (562), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/141 (75%), Positives = 121/141 (85%), Gaps = 7/141 (4%)

Query: 1   MYTASLYAAFVSLIHNKHSTLAGKRVILFSYGSGLTATMFSLQLRDGKHPFSLSNIATVM 60
           MYTAS+YAAF SL+HNK+S+L GKRVILFSYGSGLTATMFSLQLR+ KHPFSLSNIA VM
Sbjct: 331 MYTASIYAAFASLLHNKNSSLEGKRVILFSYGSGLTATMFSLQLRETKHPFSLSNIARVM 390

Query: 61  DVAGKLKSRKEFPPEKFVEIMKLMEHRYGSKEYVTSKETSLLSSGTFYLTEVDNMYRRFY 120
           DVA KLKSR EFPP+KF+E +KLMEHRYG+K+YVTSK++SLL+ GTFYLTEVD MYRRFY
Sbjct: 391 DVAEKLKSRHEFPPQKFIETLKLMEHRYGAKDYVTSKDSSLLAPGTFYLTEVDTMYRRFY 450

Query: 121 EQKTSES-------ALSANGH 134
             K+SES        LS NGH
Sbjct: 451 TTKSSESNLTPAVNGLSVNGH 471


>Medtr6g089570.1 | 3-hydroxy-3-methylglutaryl coenzyme A synthase |
           HC | chr6:22746750-22740317 | 20130731
          Length = 459

 Score =  187 bits (476), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 105/123 (85%)

Query: 1   MYTASLYAAFVSLIHNKHSTLAGKRVILFSYGSGLTATMFSLQLRDGKHPFSLSNIATVM 60
           MYTASLYAAF SL+HNKH +L GKRV++FSYGSGLT+TMFS +L++G+HPF+LSNI TVM
Sbjct: 331 MYTASLYAAFASLLHNKHDSLVGKRVVMFSYGSGLTSTMFSFRLQEGQHPFNLSNIVTVM 390

Query: 61  DVAGKLKSRKEFPPEKFVEIMKLMEHRYGSKEYVTSKETSLLSSGTFYLTEVDNMYRRFY 120
           +V+GKLK R E PPEKFVE  K+MEH YG KE+VT ++ + L  GTF+LT+VD+MYRRFY
Sbjct: 391 NVSGKLKQRIELPPEKFVENTKIMEHHYGGKEFVTGQDCNYLLPGTFFLTKVDSMYRRFY 450

Query: 121 EQK 123
            +K
Sbjct: 451 AKK 453


>Medtr5g011040.2 | 3-hydroxy-3-methylglutaryl coenzyme A synthase |
           HC | chr5:3104361-3108361 | 20130731
          Length = 427

 Score =  123 bits (308), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 60/71 (84%), Positives = 65/71 (91%)

Query: 1   MYTASLYAAFVSLIHNKHSTLAGKRVILFSYGSGLTATMFSLQLRDGKHPFSLSNIATVM 60
           MYTAS+YAAF SL+HNK+S+L GKRVILFSYGSGLTATMFSLQLR+ KHPFSLSNIA VM
Sbjct: 331 MYTASIYAAFASLLHNKNSSLEGKRVILFSYGSGLTATMFSLQLRETKHPFSLSNIARVM 390

Query: 61  DVAGKLKSRKE 71
           DVA KLKSR E
Sbjct: 391 DVAEKLKSRHE 401