Miyakogusa Predicted Gene

Lj4g3v1327520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1327520.1 Non Characterized Hit- tr|B4FD00|B4FD00_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,39.82,7e-17,seg,NULL,CUFF.48832.1
         (243 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g102360.1 | hypothetical protein | HC | chr4:42418810-4241...   323   1e-88
Medtr1g084000.2 | hypothetical protein | HC | chr1:37437982-3744...    72   5e-13
Medtr1g084000.1 | hypothetical protein | HC | chr1:37437982-3744...    72   5e-13
Medtr1g084000.3 | hypothetical protein | HC | chr1:37437982-3744...    72   5e-13

>Medtr4g102360.1 | hypothetical protein | HC |
           chr4:42418810-42415193 | 20130731
          Length = 242

 Score =  323 bits (827), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 170/236 (72%), Positives = 185/236 (78%), Gaps = 7/236 (2%)

Query: 7   VIGKEEVIAKLKDDGDFDXXXXXXXXXXXDNEELRQHITSIVKQSVALNRDGAENMKPRQ 66
           V+GKEEVI KLKDDGDFD           DNEELRQHI SIVKQS ALNR GAENMKPRQ
Sbjct: 13  VVGKEEVITKLKDDGDFDRLRLKIIRKLKDNEELRQHIISIVKQSEALNRAGAENMKPRQ 72

Query: 67  LSDSIYEEVGEKVMSQISDSLWQIIRSNDGMKGEIAETVQSVYDKLANPKGKDEVLLSTS 126
           LSD IYEEVGE VMS ISDSLWQIIRS+DGMKGEI ETVQSVYDKLANPKGKDEVLLSTS
Sbjct: 73  LSDVIYEEVGENVMSHISDSLWQIIRSSDGMKGEIVETVQSVYDKLANPKGKDEVLLSTS 132

Query: 127 DGVPVQRQGESASATEVDDTLHENEPEEPPGFTXXXXXXXXXXXEKQDKGHEEQDKGKAQ 186
           D + +Q QGE+ASATE DDTL+ENEPEEPPGFT              +  H+++DKGKAQ
Sbjct: 133 DAMSIQCQGETASATENDDTLYENEPEEPPGFT-------LLPNHLNNNNHDDRDKGKAQ 185

Query: 187 VQRQGSPAEQKEDSQPSQDTHGGDDNSNAPPGFSRDMEHNQPSDCSDEDPDLPPGF 242
           VQRQGS  E KEDS  SQDT G DD++  PPGFS+D EHN  ++CSDEDPDLPPGF
Sbjct: 186 VQRQGSTTECKEDSHLSQDTPGEDDHNIPPPGFSKDPEHNPVANCSDEDPDLPPGF 241


>Medtr1g084000.2 | hypothetical protein | HC |
           chr1:37437982-37442930 | 20130731
          Length = 202

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 1/113 (0%)

Query: 1   MASNGEVIGKEEVIAKLKDDGDFDXXXXXXXXXXXDNEELRQHITSIVKQSVALNRDGAE 60
           MAS+  VI  E+V+  L +DG  D            NEEL+     + +QS  LN  GAE
Sbjct: 1   MASSS-VITPEDVLESLMNDGTIDALRLKIINQLKANEELKSTTIKMAEQSKVLNTPGAE 59

Query: 61  NMKPRQLSDSIYEEVGEKVMSQISDSLWQIIRSNDGMKGEIAETVQSVYDKLA 113
               R+L D++ +E+   V+ + S S+W +I  N+G+  EI+ETV+ V+ +L+
Sbjct: 60  KQTKRELFDALRQELEASVLEKASKSVWDLILDNNGLGKEISETVERVFCRLS 112


>Medtr1g084000.1 | hypothetical protein | HC |
           chr1:37437982-37442930 | 20130731
          Length = 202

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 1/113 (0%)

Query: 1   MASNGEVIGKEEVIAKLKDDGDFDXXXXXXXXXXXDNEELRQHITSIVKQSVALNRDGAE 60
           MAS+  VI  E+V+  L +DG  D            NEEL+     + +QS  LN  GAE
Sbjct: 1   MASSS-VITPEDVLESLMNDGTIDALRLKIINQLKANEELKSTTIKMAEQSKVLNTPGAE 59

Query: 61  NMKPRQLSDSIYEEVGEKVMSQISDSLWQIIRSNDGMKGEIAETVQSVYDKLA 113
               R+L D++ +E+   V+ + S S+W +I  N+G+  EI+ETV+ V+ +L+
Sbjct: 60  KQTKRELFDALRQELEASVLEKASKSVWDLILDNNGLGKEISETVERVFCRLS 112


>Medtr1g084000.3 | hypothetical protein | HC |
           chr1:37437982-37442930 | 20130731
          Length = 202

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 1/113 (0%)

Query: 1   MASNGEVIGKEEVIAKLKDDGDFDXXXXXXXXXXXDNEELRQHITSIVKQSVALNRDGAE 60
           MAS+  VI  E+V+  L +DG  D            NEEL+     + +QS  LN  GAE
Sbjct: 1   MASSS-VITPEDVLESLMNDGTIDALRLKIINQLKANEELKSTTIKMAEQSKVLNTPGAE 59

Query: 61  NMKPRQLSDSIYEEVGEKVMSQISDSLWQIIRSNDGMKGEIAETVQSVYDKLA 113
               R+L D++ +E+   V+ + S S+W +I  N+G+  EI+ETV+ V+ +L+
Sbjct: 60  KQTKRELFDALRQELEASVLEKASKSVWDLILDNNGLGKEISETVERVFCRLS 112