Miyakogusa Predicted Gene

Lj4g3v1313800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1313800.1 Non Characterized Hit- tr|I1K0H7|I1K0H7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26389
PE,60.19,6e-19,seg,NULL,CUFF.48793.1
         (122 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g102230.1 | immature colon carcinoma transcript 1 protein ...    62   1e-10
Medtr4g102230.3 | immature colon carcinoma transcript 1 protein ...    62   1e-10
Medtr4g102230.2 | immature colon carcinoma transcript 1 protein ...    62   2e-10

>Medtr4g102230.1 | immature colon carcinoma transcript 1 protein |
           HC | chr4:42319525-42325193 | 20130731
          Length = 232

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 59/110 (53%), Gaps = 11/110 (10%)

Query: 4   MASATSRMVLNEML-HLSFTLPFSSLRVGSVLSRALPFSPYRNTSLLQSRHSRFPAIRCA 62
           MAS T+RM+   +L HLS T P S LR+   LSR     P+  +SL   R     AIRCA
Sbjct: 1   MASTTTRMLKGILLLHLSSTPPSSLLRITRDLSR-----PFFLSSLQLQRSHPATAIRCA 55

Query: 63  XXXXXX-XXXXXXRLSQVQHLLHEAEQRALSAD-TGPIPKITLG---VSF 107
                        RLSQV  LL EAE R+LSAD   PIPKITL    VSF
Sbjct: 56  SSASDSGNNKVSSRLSQVHELLQEAEHRSLSADYNAPIPKITLDHVTVSF 105


>Medtr4g102230.3 | immature colon carcinoma transcript 1 protein |
           HC | chr4:42319525-42325193 | 20130731
          Length = 185

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 59/110 (53%), Gaps = 11/110 (10%)

Query: 4   MASATSRMVLNEML-HLSFTLPFSSLRVGSVLSRALPFSPYRNTSLLQSRHSRFPAIRCA 62
           MAS T+RM+   +L HLS T P S LR+   LSR     P+  +SL   R     AIRCA
Sbjct: 1   MASTTTRMLKGILLLHLSSTPPSSLLRITRDLSR-----PFFLSSLQLQRSHPATAIRCA 55

Query: 63  XXXXXX-XXXXXXRLSQVQHLLHEAEQRALSAD-TGPIPKITLG---VSF 107
                        RLSQV  LL EAE R+LSAD   PIPKITL    VSF
Sbjct: 56  SSASDSGNNKVSSRLSQVHELLQEAEHRSLSADYNAPIPKITLDHVTVSF 105


>Medtr4g102230.2 | immature colon carcinoma transcript 1 protein |
           HC | chr4:42319525-42325193 | 20130731
          Length = 202

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 59/110 (53%), Gaps = 11/110 (10%)

Query: 4   MASATSRMVLNEML-HLSFTLPFSSLRVGSVLSRALPFSPYRNTSLLQSRHSRFPAIRCA 62
           MAS T+RM+   +L HLS T P S LR+   LSR     P+  +SL   R     AIRCA
Sbjct: 1   MASTTTRMLKGILLLHLSSTPPSSLLRITRDLSR-----PFFLSSLQLQRSHPATAIRCA 55

Query: 63  XXXXXX-XXXXXXRLSQVQHLLHEAEQRALSAD-TGPIPKITLG---VSF 107
                        RLSQV  LL EAE R+LSAD   PIPKITL    VSF
Sbjct: 56  SSASDSGNNKVSSRLSQVHELLQEAEHRSLSADYNAPIPKITLDHVTVSF 105