Miyakogusa Predicted Gene

Lj4g3v1288460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1288460.1 tr|A9SUD2|A9SUD2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_166600,57.14,0.16,seg,NULL; DUF2499,Uncharacterised
protein family Ycf49,NODE_3777_length_822_cov_60.150852.path2.1
         (168 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g011460.1 | ycf49-like protein | HC | chr5:3288943-3293451...   221   2e-58

>Medtr5g011460.1 | ycf49-like protein | HC | chr5:3288943-3293451 |
           20130731
          Length = 172

 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/171 (69%), Positives = 125/171 (73%), Gaps = 17/171 (9%)

Query: 8   TLCLPRPCC-TPKIPFPSDSRI---SSYRIGAGKPQQASTKAKAGLSLFLDFVEPAS--- 60
           TL L +PCC TPKI FPS+SR+   S  R G  KP       KAGLS FL+ VE  S   
Sbjct: 6   TLYLAKPCCSTPKISFPSNSRVVNNSRCRFGTLKP-------KAGLSHFLNIVETTSSYI 58

Query: 61  ---LQLQLHEPSNALSLPTWAVHVSSVVEWIIAMALVWQYGEKSGYEAWKGLSWGMVPLL 117
              LQL+L EPSNALSLPTWAVHVSSVVEWIIAMALVWQYGEKSGYEAWKGLSWGMVPLL
Sbjct: 59  QLPLQLELQEPSNALSLPTWAVHVSSVVEWIIAMALVWQYGEKSGYEAWKGLSWGMVPLL 118

Query: 118 GGAFCACTWHFFYNDESXXXXXXXXXXXXXXGNATMCIAAYRIYKSSRESA 168
           GGAFCACTWHFFYN +S              GN TMCIAAYRIYKSSRES+
Sbjct: 119 GGAFCACTWHFFYNSDSLEVLVALQAALTVIGNFTMCIAAYRIYKSSRESS 169