Miyakogusa Predicted Gene

Lj4g3v1287420.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1287420.2 tr|G7LGI2|G7LGI2_MEDTR Tyrosyl-DNA
phosphodiesterase OS=Medicago truncatula GN=MTR_8g095490 PE=4
SV=,72.16,0,Phospholipase D/nuclease,NULL; SMAD/FHA domain,SMAD/FHA
domain; FHA_DOMAIN,Forkhead-associated (FHA),CUFF.48767.2
         (1050 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g095490.1 | tyrosyl-DNA phosphodiesterase | HC | chr8:3996...  1448   0.0  
Medtr7g050860.1 | tyrosyl-DNA phosphodiesterase | HC | chr7:1775...    57   8e-08

>Medtr8g095490.1 | tyrosyl-DNA phosphodiesterase | HC |
            chr8:39969676-39961395 | 20130731
          Length = 1064

 Score = 1448 bits (3748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 734/1074 (68%), Positives = 826/1074 (76%), Gaps = 40/1074 (3%)

Query: 5    DSDSDSTPNKK-------QRTTVVLNHFDVPLISSASNGVVSPCDSMRLHADYPYSIGRK 57
            DS+S+S  NK+          +VVLNHF +PL S++ NG+VS C +M LHAD PYSIGRK
Sbjct: 3    DSNSNSNHNKRPFPHIPLSSVSVVLNHFHLPLFSTSQNGIVSLCTTMHLHADQPYSIGRK 62

Query: 58   PRDCDFVFHDRRVSKRHGQIFFDGSLRKLYLLSGVLSNSDCSTITTNAHLVHEFRKRVVM 117
              DC FVF+DRRVSKRH QIFFDGSLRKLY+LSG+LSN+  S I + + +VHEFRKRV+M
Sbjct: 63   RHDCHFVFNDRRVSKRHCQIFFDGSLRKLYILSGILSNTG-SAIDSKSRIVHEFRKRVMM 121

Query: 118  GSRGSDRIPFREASNGVFVNGVEIGKGMAVELSAGDRVSLVCGNQSGSCDVGNRIGFVVQ 177
             S GS+  P  EASNGVFVNGVEI KGMAVEL  GDRVSLVCGN + SC +GNRIGFVV 
Sbjct: 122  FSCGSEGFPILEASNGVFVNGVEIRKGMAVELMEGDRVSLVCGNWNASCGIGNRIGFVVD 181

Query: 178  RIVLEGCEWDRDGGGDSVEIDGLTFSGHSQSGKRSKRVFAVKVGVSRCEGVVGRARFLLD 237
            RI++E C    +G G    IDG TFSGHSQS KR KRVFAVK   S+ +GV  RA++L+D
Sbjct: 182  RIIVENC----NGVGG---IDGSTFSGHSQSDKRRKRVFAVKANDSKFDGVFVRAKYLID 234

Query: 238  KCRDILLSDDPLSCISRAVSDL------------PSRVVENXXXXXXXXXXXXXAMLCES 285
            +CRDILLS DPLSCI  + SDL              R  E+              +LC+S
Sbjct: 235  RCRDILLSHDPLSCILHSDSDLQCGYKFEIGTELAQRAREDTGIDVVQSSS---GLLCKS 291

Query: 286  KVMDLEAKSEHFGGRGNAGVACVSAMDDNNHDAALRDSVAKDSLPSCGA---------FH 336
            K +DLE   E+F  +G+ GV  V+A  D N +  + DS+ KD++ S            F+
Sbjct: 292  KGIDLEENGENFCRKGDLGVDYVNAFGDKNLNLTVSDSIEKDNVSSDSDNEQGTNQHDFY 351

Query: 337  PPPGKNFYLNRLELMDXXXXXXXXXXXXXPELIYPVESISRMFIATFTSDIKWFLTYCKI 396
            PPPGKNFYLNRLE M+              ELI+P+ES++RMFIATFTSDI WFLTYCKI
Sbjct: 352  PPPGKNFYLNRLEYMNHDSSSGLDNSISLTELIHPIESVTRMFIATFTSDITWFLTYCKI 411

Query: 397  PFHLPVTIACHNTERCWSSRPDEREFVPYQDYPNLVVVCPPFPETIAFGNNRKKQGIACH 456
            P+HLPVTIAC NTE+CWSS+PDER FVPYQ+YPNLVVV PPFPETIAFG + K+ GIACH
Sbjct: 412  PYHLPVTIACQNTEKCWSSKPDERVFVPYQNYPNLVVVHPPFPETIAFGKDHKRHGIACH 471

Query: 457  HPKLIVVQREDSIRVVITSANLVEKQWNYVTNTIWWQDFPRGNSVDFASLFPKIDDGEIH 516
            HPKLIV+QREDSIRV+ITSANLVEKQWN VTNTIWWQDFPR   VD+ASLF KIDD E+H
Sbjct: 472  HPKLIVLQREDSIRVIITSANLVEKQWNSVTNTIWWQDFPRAILVDYASLFRKIDDDEVH 531

Query: 517  SDSKCDFAAQLAGFMASLVIDVPSQAQWITQLTKYDFEGATGHLVASVPGIHFYRTSVLL 576
             +SKCDFAAQLAGFMASLVIDVPSQA WITQLTKYDF  ATGHLVAS+PGIH  RTSVLL
Sbjct: 532  RNSKCDFAAQLAGFMASLVIDVPSQAHWITQLTKYDFGSATGHLVASLPGIHLNRTSVLL 591

Query: 577  ESFQTSPFXXXXXXXXXXXXHLFRTVADSNSARLKTLAVFLRKSCRKANGWLEIVLRRNS 636
            ESFQ+S F            HLFR VADSNSA L+ LA  L K C+  NG  EIVLRRN 
Sbjct: 592  ESFQSSSFLGSVVASVVGLSHLFRAVADSNSAGLRALAAVLGKYCKNVNGRFEIVLRRNH 651

Query: 637  SVPADKNAVSVLIPNPDETSEGDYVQLGFLPRDVAKWISPLWDAGFFIFSGCVCPVEALA 696
            +VPAD+NAVSVL+P  D+TSEGD+VQLGFLPR++AKW+SPLWDAGFF FSG VCP EALA
Sbjct: 652  NVPADENAVSVLVPKSDQTSEGDFVQLGFLPRNLAKWVSPLWDAGFFSFSGYVCPKEALA 711

Query: 697  AALGENSKKVQLILNVSEGPHFQDMPKMMQSEQIVAFCSLIASIQRCYGLWRLQEVLNRY 756
            AALGENS+K+QLILNVSEG HF+DM KMMQSEQI AFCSLIASIQR YGLWRLQEVLN+Y
Sbjct: 712  AALGENSQKLQLILNVSEGHHFRDMSKMMQSEQIAAFCSLIASIQRHYGLWRLQEVLNQY 771

Query: 757  RWPESLESEIIYGASSIGSSVNSKFLAAFSAAAGKKSLQHFDSEESDPEWGCWNANEELK 816
            RWPESLESEI+YGASSIG SVNSKFLAAFSAAAGKKSLQHFDSEESDPEWGCWNA EELK
Sbjct: 772  RWPESLESEIVYGASSIG-SVNSKFLAAFSAAAGKKSLQHFDSEESDPEWGCWNAREELK 830

Query: 817  NPSVWIIFPTIERVKNAYNGILPSRRMLCFAERTWQRLKTFDVLRDAIPHPCERIGHPMH 876
            NPSV IIFPTIERVK+AYNGILPSRR+LCF+ERTWQRLKT DVL DA+PHP ER+GHPMH
Sbjct: 831  NPSVKIIFPTIERVKSAYNGILPSRRILCFSERTWQRLKTLDVLHDAVPHPHERVGHPMH 890

Query: 877  TKVIRRCFWSKGDAPSIGWVYCGSHNFSAAAWGRQISNPFGTKASEPKKVDPSVNSGLHI 936
            TKV+RRCFWS+G+APSIGWVYCGSHNFSAAAWGRQISNPFGTKA +P K DPSVNSGLHI
Sbjct: 891  TKVVRRCFWSRGEAPSIGWVYCGSHNFSAAAWGRQISNPFGTKADDPHKGDPSVNSGLHI 950

Query: 937  CNYELGIIFTFPPIENNYCSEVQRTKLDDIILPFVVPAPKYGFRDRPATMQAMREAMXXX 996
            CNYELGIIFTFPP ENN C +V+ TKLDDI+LP+VVPAPKYG  D+PAT  AMRE M   
Sbjct: 951  CNYELGIIFTFPPSENNECPKVKSTKLDDIVLPYVVPAPKYGSLDKPATKLAMREVMTEL 1010

Query: 997  XXXXXXXXXXXXXXXXXXXXXXXXXATNNVGXXXXXXKAYAEILWSQVDSSQSS 1050
                                       N VG      KAYAEILWSQVDSSQ+S
Sbjct: 1011 AEREGEKQAEEEIMEEILEEEEEIEEINCVGEEKEEEKAYAEILWSQVDSSQNS 1064


>Medtr7g050860.1 | tyrosyl-DNA phosphodiesterase | HC |
           chr7:17758152-17770806 | 20130731
          Length = 634

 Score = 57.4 bits (137), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 43/199 (21%)

Query: 380 IATFTSDIKWFLTYCKIPFHLPVTIACHNTERCWSSRPDEREFVPYQDYP-NLVVVCPPF 438
           ++ +  D+ W +  C     +P  +  H          DER     +  P N ++  PP 
Sbjct: 202 LSNYMVDVDWLVPACPALSKVPHVLVLHGES-------DERVACIKRSKPKNWILHKPPL 254

Query: 439 PETIAFGNNRKKQGIACHHPKLIVVQREDSIRVVITSANLVEKQWNYVTNTIWWQDFPRG 498
           P  I+FG          HH K + +     +RV+I +ANL+   WN  +  +W QDFP  
Sbjct: 255 P--ISFG---------THHSKAMFLVYPRGVRVIIHTANLIYVDWNNKSQGLWMQDFPWK 303

Query: 499 NSVDFASLFPKIDDGEIHSDSK-CDFAAQLAGFMASL-----VIDVPSQAQWI---TQLT 549
           +                +S SK   F   L  ++++L      +++PS   +    +   
Sbjct: 304 DQ---------------NSPSKGSRFENDLVEYLSALKWPEFSVNLPSLGNFSICPSFFK 348

Query: 550 KYDFEGATGHLVASVPGIH 568
           K+D+  A   L+ASVPG H
Sbjct: 349 KFDYSDAMVRLIASVPGYH 367