Miyakogusa Predicted Gene

Lj4g3v1286240.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1286240.1 Non Characterized Hit- tr|D5A8X0|D5A8X0_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,46.15,0.0000000000009,LEUKOCYTE RECEPTOR CLUSTER (LRC) MEMBER
1,NULL; N-terminal domain of CBF1 interacting
co-rep,CBF1-in,CUFF.48759.1
         (218 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g101030.1 | hypothetical protein | HC | chr4:41724746-4172...   181   5e-46

>Medtr4g101030.1 | hypothetical protein | HC |
           chr4:41724746-41721391 | 20130731
          Length = 237

 Score =  181 bits (459), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 99/167 (59%), Positives = 108/167 (64%), Gaps = 18/167 (10%)

Query: 1   MGGHGGLNILPQKRWNVYNFDNREKVRRDEEEAAKEEQLKREQARKRDTEFRLERLRTAK 60
           MGGHGGLNILPQKRWNVYNFDNREKVR+DEE AAKEEQLKREQ+RKRDTE RLE+LR AK
Sbjct: 1   MGGHGGLNILPQKRWNVYNFDNREKVRKDEEAAAKEEQLKREQSRKRDTEVRLEQLRVAK 60

Query: 61  GLA-----------XXXXXXXXXXXXXVAADPGHINLFEGIKIFDPVXXXXXXXXXXXDS 109
           GLA                         A D GHINLF+GIKIFDP+           + 
Sbjct: 61  GLAPTIPPPESEPEAKPKSEANPEIEAEAGDLGHINLFKGIKIFDPIRVPKREIVDEKEE 120

Query: 110 RXXXXXXX-------EEVRVVGPEDEKYRLGYGVAGKGVQLPWYVRK 149
                          E VR VGPEDEKY+LGYGVAGKGV+LPWYV+K
Sbjct: 121 LKKNYKKLKMRKEPGETVRAVGPEDEKYKLGYGVAGKGVELPWYVQK 167