Miyakogusa Predicted Gene

Lj4g3v1286210.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1286210.1 tr|B9GVG0|B9GVG0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_757344 PE=4
SV=1,59.32,0.00000000000006,HMA, heavy metal-associated domain,Heavy
metal-associated domain, HMA; HMA_2,Heavy metal-associated
,CUFF.48758.1
         (111 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g101025.1 | hypothetical protein | HC | chr4:41720247-4171...    74   3e-14
Medtr1g067560.1 | copper chaperone | HC | chr1:29144569-29146076...    50   4e-07
Medtr7g100450.1 | copper chaperone | HC | chr7:40453042-40454776...    50   5e-07
Medtr4g062450.1 | heavy-metal-associated domain protein | HC | c...    48   3e-06
Medtr7g013660.1 | copper chaperone | HC | chr7:3949006-3946807 |...    47   5e-06

>Medtr4g101025.1 | hypothetical protein | HC |
           chr4:41720247-41718426 | 20130731
          Length = 190

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 54  SKMTGLTEYTIDVSKKEVTLKGDFIAHCNFKDENLRSITLKSATIRLKSMFSCLNNFD 111
           +K  GLTEYTIDV K EV++KGDF+A C+F+ ++ RS  LKS+T + KS+F+CL  FD
Sbjct: 126 TKYAGLTEYTIDVRKNEVSVKGDFMARCDFQSKSFRSRALKSSTDQPKSLFACLTQFD 183



 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 39/50 (78%)

Query: 13 DENEYRSLLYMANLTLPLFQVVVITANMECNGCRGRVSRVVSKMTGLTEY 62
          +EN+ RSLLY+ NLTLP FQVVVI A   CNGC+ RVSR+VSKM G+  +
Sbjct: 5  NENDNRSLLYLENLTLPSFQVVVIEATTGCNGCQERVSRIVSKMIGVGGW 54


>Medtr1g067560.1 | copper chaperone | HC | chr1:29144569-29146076 |
           20130731
          Length = 261

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 32/45 (71%)

Query: 32  QVVVITANMECNGCRGRVSRVVSKMTGLTEYTIDVSKKEVTLKGD 76
           QVVV+  ++ C GC G++ + +SKM G+T + ID + K+VT+ GD
Sbjct: 185 QVVVLRVSLHCKGCEGKLRKHISKMQGVTSFNIDFAAKKVTIVGD 229


>Medtr7g100450.1 | copper chaperone | HC | chr7:40453042-40454776 |
           20130731
          Length = 286

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query: 32  QVVVITANMECNGCRGRVSRVVSKMTGLTEYTIDVSKKEVTLKGDF 77
           QVVV+  ++ C GC G+V + +S+M G+T + ID + K+VT+ GD 
Sbjct: 209 QVVVLRVSLHCKGCEGKVRKHLSRMQGVTSFNIDFAAKKVTVVGDV 254


>Medtr4g062450.1 | heavy-metal-associated domain protein | HC |
           chr4:23207739-23209696 | 20130731
          Length = 240

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%)

Query: 32  QVVVITANMECNGCRGRVSRVVSKMTGLTEYTIDVSKKEVTLKGD 76
           QVVV+  ++ C  C G+V + +SKM G+  +TI++  K+VT+ GD
Sbjct: 151 QVVVLRVSLHCKACEGKVRKHISKMEGVRSFTIEMETKKVTIIGD 195


>Medtr7g013660.1 | copper chaperone | HC | chr7:3949006-3946807 |
          20130731
          Length = 126

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 32 QVVVITANMECNGCRGRVSRVVSKMTGLTEYTIDVSKKEVTLKGDFIAHCNF 83
          + VV+   M C+GC G V+RV+ KM G+  + ID+ +++VT+KG+      F
Sbjct: 4  ETVVLKVKMSCSGCSGAVNRVLEKMEGVESFDIDMKEQKVTVKGNVKPQDVF 55