Miyakogusa Predicted Gene

Lj4g3v1260340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1260340.1 tr|I1MGV6|I1MGV6_SOYBN 60S ribosomal protein L27
OS=Glycine max GN=Gma.55267 PE=3 SV=1,88.15,0,RIBOSOMAL_L27E,Ribosomal
protein L27e, conserved site; no description,Translation protein
SH3-like, ,CUFF.48726.1
         (135 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g006170.1 | 60S ribosomal protein L27-1 | HC | chr2:483554...   196   6e-51
Medtr2g035930.1 | 60S ribosomal protein L27-1 | HC | chr2:152350...   196   6e-51

>Medtr2g006170.1 | 60S ribosomal protein L27-1 | HC |
           chr2:483554-482592 | 20130731
          Length = 135

 Score =  196 bits (498), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 104/135 (77%)

Query: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTHGRPYGHCLVAGIKKYPSKVIXXXXXX 60
           MVKFLKPNKAVI+LQGRYAGKKAVIVK FDDGT  R YGHCLVAGIKKYP+KVI      
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGKKAVIVKNFDDGTRERAYGHCLVAGIKKYPAKVIKKDSAK 60

Query: 61  XXXXXSRVKAFMKLVNYQHLMPTRYTLDVDLKDAVSTNALVSKDQKVTALXXXXXXXXXX 120
                SRVKAF+KLVNYQHLMPTRYTLDVDLK+ V+T+ L SKD+KVTAL          
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKEVVTTDVLQSKDKKVTALKEAKKRFEER 120

Query: 121 XXXGKNRWFFTKLRF 135
              GKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135


>Medtr2g035930.1 | 60S ribosomal protein L27-1 | HC |
           chr2:15235094-15235845 | 20130731
          Length = 135

 Score =  196 bits (497), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 104/135 (77%)

Query: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTHGRPYGHCLVAGIKKYPSKVIXXXXXX 60
           MVKFLKPNKAVI+LQGRYAGKKAVIVK FDDGT  R YGHCLVAGIKKYP+KVI      
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGKKAVIVKNFDDGTRDRAYGHCLVAGIKKYPAKVIKKDSAK 60

Query: 61  XXXXXSRVKAFMKLVNYQHLMPTRYTLDVDLKDAVSTNALVSKDQKVTALXXXXXXXXXX 120
                SRVKAF+KLVNYQHLMPTRYTLDVDLK+ V+T+ L SKD+KVTAL          
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKEVVTTDVLQSKDKKVTALKEAKKRFEER 120

Query: 121 XXXGKNRWFFTKLRF 135
              GKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135