Miyakogusa Predicted Gene

Lj4g3v1259310.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1259310.1 Non Characterized Hit- tr|I1J9W2|I1J9W2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13931
PE,42.59,0.00000000006, ,CUFF.48725.1
         (113 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g100975.1 | transmembrane protein, putative | HC | chr4:41...   110   3e-25

>Medtr4g100975.1 | transmembrane protein, putative | HC |
           chr4:41694029-41693012 | 20130731
          Length = 116

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 84/121 (69%), Gaps = 13/121 (10%)

Query: 1   MGLHMVAPLVKLHWQLTGHALRPAVAGVLASPLLLKLLMGFRVFRDEALYQSRLFLFRLS 60
           M LH  A L+KLH QL     +PAVAG   +  +LKLLMGFR F+DEALYQS+LFLFRLS
Sbjct: 1   MVLH-AATLLKLHLQLA----KPAVAGFSTTICVLKLLMGFRFFKDEALYQSKLFLFRLS 55

Query: 61  HIAFSSELPLSNVARMERALRLIF-------GSVTATASTSMEDSQMEQET-FHALSLLS 112
            IAF++E  +S V RMERALRLIF        S+ +T+S   +D Q +QE  F++LS+L+
Sbjct: 56  QIAFNNEPQVSTVQRMERALRLIFPTHATVTPSINSTSSQEEQDLQNDQEEMFYSLSMLA 115

Query: 113 L 113
           L
Sbjct: 116 L 116