Miyakogusa Predicted Gene

Lj4g3v1259130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1259130.1 tr|B9H0P1|B9H0P1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_712927 PE=4
SV=1,44.83,8e-19,coiled-coil,NULL,CUFF.48716.1
         (96 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g116310.1 | mediator of RNA polymerase II transcription su...    92   9e-20
Medtr3g116260.1 | mediator of RNA polymerase II transcription su...    86   9e-18

>Medtr3g116310.1 | mediator of RNA polymerase II transcription
          subunit 32, putative | HC | chr3:54395052-54395324 |
          20130731
          Length = 90

 Score = 92.4 bits (228), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 53/65 (81%)

Query: 1  MDSVVDSLNNAYQDLVDAAANVLEAKENVGALETTATDTAPENFKQKLILFKVACDQAEE 60
          MDSVVDSL NAYQD VDAAA VLEA    GAL+T ATDTA ++FKQK  LFKVACDQAEE
Sbjct: 1  MDSVVDSLKNAYQDFVDAAATVLEASNISGALDTAATDTALKSFKQKWELFKVACDQAEE 60

Query: 61 FVRRL 65
          +V+ +
Sbjct: 61 YVQSV 65


>Medtr3g116260.1 | mediator of RNA polymerase II transcription
          subunit 32 | HC | chr3:54379507-54380794 | 20130731
          Length = 148

 Score = 85.5 bits (210), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 50/62 (80%)

Query: 1  MDSVVDSLNNAYQDLVDAAANVLEAKENVGALETTATDTAPENFKQKLILFKVACDQAEE 60
          MDSVVDSLN+AY D + AAA VLEA+E   AL+  ATDTA E+FKQK  LF+VACDQAEE
Sbjct: 1  MDSVVDSLNSAYLDFIAAAATVLEARETSTALKNIATDTALESFKQKWELFRVACDQAEE 60

Query: 61 FV 62
          +V
Sbjct: 61 YV 62