Miyakogusa Predicted Gene

Lj4g3v1259120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1259120.1 CUFF.48717.1
         (234 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g100930.1 | peroxisome biogenesis protein | HC | chr4:4166...   334   3e-92

>Medtr4g100930.1 | peroxisome biogenesis protein | HC |
           chr4:41667044-41670595 | 20130731
          Length = 248

 Score =  334 bits (857), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 186/236 (78%), Positives = 200/236 (84%), Gaps = 12/236 (5%)

Query: 6   HSDDLNQLLDSALDDFQNFNLXXXXXXXXKPRTG-QPKDEETSP-LPSEVQGLGMGLPDL 63
           HSDDL+QLLDSALDDFQ  NL         PRTG Q  +++ SP LPS VQGLG+GLPDL
Sbjct: 4   HSDDLDQLLDSALDDFQTLNLNSSL-----PRTGEQTGNKKESPSLPSGVQGLGLGLPDL 58

Query: 64  RIKKKGKQKVSKDTHVSEALNKLREQTREAVKGLESMAQPA-----DDLGKDAMMEDWVK 118
           + KKKGKQKVSKD HVSEALNKLREQT+EAVKGLE +  P      DDLGKD MMEDWVK
Sbjct: 59  KSKKKGKQKVSKDAHVSEALNKLREQTKEAVKGLEFINPPGAGAGVDDLGKDGMMEDWVK 118

Query: 119 QFEDLAGSQDMESIVETMMQQLLSKEILHEPMKEIEEKYPKWLEEHKTSLSNEDYDRYMH 178
           QFE+LAGSQDMESIVETMMQQLLSKEIL EPMKEI E+YPKWLEEHK +LS E+YDRY H
Sbjct: 119 QFEELAGSQDMESIVETMMQQLLSKEILAEPMKEIGERYPKWLEEHKANLSKEEYDRYSH 178

Query: 179 QYKLIQNLNEVYEKDSGNFKKIVELMQKMQECGQPPNDIVQELAPDLDLASLGQLS 234
           QY+LI+NLNEVYEKDSGNF KIVELMQKMQECGQPPNDIVQELAPD DLASLGQLS
Sbjct: 179 QYELIRNLNEVYEKDSGNFNKIVELMQKMQECGQPPNDIVQELAPDFDLASLGQLS 234