Miyakogusa Predicted Gene
- Lj4g3v1259110.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1259110.1 tr|G7JIW4|G7JIW4_MEDTR Asparaginyl-tRNA
synthetase OS=Medicago truncatula GN=MTR_4g100920 PE=3
SV=1,82.11,0,asnS: asparagine--tRNA ligase,Asparagine-tRNA ligase,
class IIb; tRNA-synt_2,Aminoacyl-tRNA syntheta,CUFF.48715.1
(375 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g100920.2 | asparagine-tRNA ligase | HC | chr4:41665479-41... 562 e-160
Medtr4g100920.1 | asparagine-tRNA ligase | HC | chr4:41665503-41... 561 e-160
Medtr7g101050.1 | cytoplasmic asparagine-tRNA ligase | HC | chr7... 231 1e-60
Medtr8g102050.1 | cytoplasmic asparagine-tRNA ligase | HC | chr8... 171 1e-42
Medtr8g102050.2 | cytoplasmic asparagine-tRNA ligase | HC | chr8... 171 1e-42
Medtr8g011530.1 | asparagine-tRNA ligase | HC | chr8:3134854-313... 159 6e-39
>Medtr4g100920.2 | asparagine-tRNA ligase | HC |
chr4:41665479-41658740 | 20130731
Length = 463
Score = 562 bits (1449), Expect = e-160, Method: Compositional matrix adjust.
Identities = 286/380 (75%), Positives = 306/380 (80%), Gaps = 11/380 (2%)
Query: 4 VAIATRPFRLIKPYT-AALAYLSLHTTXX-----XXXXXXXXXXXXXXXXXLFCAATLPS 57
VA+ATRP R++KP++ A AYL+ +T +FC ATLPS
Sbjct: 3 VAMATRPLRIVKPFSYVAFAYLNASSTLKPSFLLRSHPLPSSPFSSSHRRRIFCTATLPS 62
Query: 58 -ADHKVSKFRKKLKIADVKAXXXXXXXXXXXXXXGWVRTLRPQATVTFLEINDGSCLSNM 116
A +KV +FRKKLK++DVK GWVRTLR Q++VTFLEINDGSCLSNM
Sbjct: 63 DATNKVPQFRKKLKVSDVK-DGQFDSLGNTLVLQGWVRTLRLQSSVTFLEINDGSCLSNM 121
Query: 117 QCVLDPEVEGYDQV--GLITTGASVWVQGVVVESQGAXXXXXXXXXXXXXXXXSDPSFPI 174
QCVLD EVEGYDQV GLITTGASVWVQG+VV+SQG SDPSFPI
Sbjct: 122 QCVLDTEVEGYDQVESGLITTGASVWVQGIVVKSQGTKQKVELKLNKIVLVGKSDPSFPI 181
Query: 175 QKKRVSNEFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 234
QKKRVS EFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE
Sbjct: 182 QKKRVSREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 241
Query: 235 GAGEQFCVTTLIPSSHESADSPIDAIPKINDKLIDWSQDFFGKPAFLTVSGQLNAETYAT 294
GAGEQFCVTTLIP+SHE+ADSP+DAIPK NDKLIDWSQDFFGKPAFLTVSGQLNAETYAT
Sbjct: 242 GAGEQFCVTTLIPNSHETADSPVDAIPK-NDKLIDWSQDFFGKPAFLTVSGQLNAETYAT 300
Query: 295 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRYILDNC 354
ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIR+ILDNC
Sbjct: 301 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRHILDNC 360
Query: 355 KEDMEFFNTWTDKGIIDRLS 374
KEDMEFFNTW DKGIIDRLS
Sbjct: 361 KEDMEFFNTWIDKGIIDRLS 380
>Medtr4g100920.1 | asparagine-tRNA ligase | HC |
chr4:41665503-41658740 | 20130731
Length = 546
Score = 561 bits (1446), Expect = e-160, Method: Compositional matrix adjust.
Identities = 286/380 (75%), Positives = 306/380 (80%), Gaps = 11/380 (2%)
Query: 4 VAIATRPFRLIKPYT-AALAYLSLHTTXX-----XXXXXXXXXXXXXXXXXLFCAATLPS 57
VA+ATRP R++KP++ A AYL+ +T +FC ATLPS
Sbjct: 3 VAMATRPLRIVKPFSYVAFAYLNASSTLKPSFLLRSHPLPSSPFSSSHRRRIFCTATLPS 62
Query: 58 -ADHKVSKFRKKLKIADVKAXXXXXXXXXXXXXXGWVRTLRPQATVTFLEINDGSCLSNM 116
A +KV +FRKKLK++DVK GWVRTLR Q++VTFLEINDGSCLSNM
Sbjct: 63 DATNKVPQFRKKLKVSDVK-DGQFDSLGNTLVLQGWVRTLRLQSSVTFLEINDGSCLSNM 121
Query: 117 QCVLDPEVEGYDQV--GLITTGASVWVQGVVVESQGAXXXXXXXXXXXXXXXXSDPSFPI 174
QCVLD EVEGYDQV GLITTGASVWVQG+VV+SQG SDPSFPI
Sbjct: 122 QCVLDTEVEGYDQVESGLITTGASVWVQGIVVKSQGTKQKVELKLNKIVLVGKSDPSFPI 181
Query: 175 QKKRVSNEFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 234
QKKRVS EFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE
Sbjct: 182 QKKRVSREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 241
Query: 235 GAGEQFCVTTLIPSSHESADSPIDAIPKINDKLIDWSQDFFGKPAFLTVSGQLNAETYAT 294
GAGEQFCVTTLIP+SHE+ADSP+DAIPK NDKLIDWSQDFFGKPAFLTVSGQLNAETYAT
Sbjct: 242 GAGEQFCVTTLIPNSHETADSPVDAIPK-NDKLIDWSQDFFGKPAFLTVSGQLNAETYAT 300
Query: 295 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRYILDNC 354
ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIR+ILDNC
Sbjct: 301 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRHILDNC 360
Query: 355 KEDMEFFNTWTDKGIIDRLS 374
KEDMEFFNTW DKGIIDRLS
Sbjct: 361 KEDMEFFNTWIDKGIIDRLS 380
>Medtr7g101050.1 | cytoplasmic asparagine-tRNA ligase | HC |
chr7:40762406-40766030 | 20130731
Length = 576
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 188/355 (52%), Gaps = 75/355 (21%)
Query: 91 GWVRTLRP--QATVTFLEINDGSCLSNMQCVLDPEVEGYDQVGLITTGASVWVQGVVV-- 146
GWV+T R + FL++NDG+C N+Q +++ + Q L+ TG V V G +
Sbjct: 55 GWVKTGRKADKDAFAFLQLNDGTCAGNLQVIVEASLADLGQ--LVLTGTCVVVDGYLKLP 112
Query: 147 -ESQGAXXXXXXXXXXXXXXXXSDPS-FPIQKKRVSN----EFLRTKAHLRPRTNTFGAV 200
+ DP+ +P+ K R++ EFLR HLR RTNT AV
Sbjct: 113 PSGEKQNKKIELRADKVLHVGPVDPAKYPLPKLRLTPDKNLEFLRNFVHLRSRTNTISAV 172
Query: 201 ARVRNALAYATHKFFQENGFVWVSSPII-------------------------------- 228
AR+ NALAYATH FF ++GF++V +PI+
Sbjct: 173 ARIGNALAYATHTFFNKHGFLYVRTPIVTTSDCEGAGEMFQVTTLFSEAERLEKELIQNP 232
Query: 229 --TASDCEGAG----EQFCVTTLIPSSHESADSPIDAIPKIN------------------ 264
T SD E A E+ V + + ++ E A+ ++
Sbjct: 233 PPTESDVEAAKLVVQEKGEVVSQLKTAEEKEKEITAAVDELKKAKRNVSKLEERSKLQPS 292
Query: 265 ----DKLIDWSQDFFGKPAFLTVSGQLNAETYATALSDVYTFGPTFRAENSNTSRHLAEF 320
D ID+++DFF + AFLTVSGQL E+YA ALS VYTFGPTFRAENS+TSRHLAEF
Sbjct: 293 IPRKDGKIDYAKDFFARQAFLTVSGQLQVESYACALSSVYTFGPTFRAENSHTSRHLAEF 352
Query: 321 WMIEPELAFADLNDDMACATAYLQFVIRYILDNCKEDMEFFNTWTDKGIIDRLSV 375
WM+EPE+AFADL DDM CA AY++F+ +++LDNC EDMEF DKG IDRL +
Sbjct: 353 WMVEPEIAFADLEDDMKCAEAYVKFLCQWLLDNCLEDMEFM---ADKGCIDRLKM 404
>Medtr8g102050.1 | cytoplasmic asparagine-tRNA ligase | HC |
chr8:42909869-42915043 | 20130731
Length = 551
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/117 (66%), Positives = 95/117 (81%), Gaps = 1/117 (0%)
Query: 259 AIPKINDKLIDWSQDFFGKPAFLTVSGQLNAETYATALSDVYTFGPTFRAENSNTSRHLA 318
IP+ + K +D+++DFF + AFLTVSGQL E+YA ALS VYTFGPTFRAENS+TSRHLA
Sbjct: 269 GIPRKDGK-VDYTKDFFARQAFLTVSGQLQVESYACALSRVYTFGPTFRAENSHTSRHLA 327
Query: 319 EFWMIEPELAFADLNDDMACATAYLQFVIRYILDNCKEDMEFFNTWTDKGIIDRLSV 375
EFWM+EPE+AFADL DDM CA AY++F+ R++LDNC EDMEF DKG IDRL +
Sbjct: 328 EFWMVEPEIAFADLEDDMKCAEAYVKFLCRWLLDNCLEDMEFMADKFDKGCIDRLKM 384
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 97/159 (61%), Gaps = 6/159 (3%)
Query: 91 GWVRTLRP--QATVTFLEINDGSCLSNMQCVLDPEVEGYDQVGLITTGASVWVQG-VVVE 147
GWV+T R + FLE+NDGSC N+Q ++D + Q L+ TG V V+G + +
Sbjct: 38 GWVKTGRKADKDAFAFLELNDGSCAGNLQVIIDASLADLGQ--LVQTGTCVVVEGHLKLP 95
Query: 148 SQGAXXXXXXXXXXXXXXXXSDPS-FPIQKKRVSNEFLRTKAHLRPRTNTFGAVARVRNA 206
GA DP+ +P+ K R++ E LR HLR RTNT AVAR+RNA
Sbjct: 96 PSGAKQKIELRAEEVLHVGPVDPAKYPLPKTRLTLESLRDFVHLRSRTNTISAVARIRNA 155
Query: 207 LAYATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTL 245
LAYATH FF ++GF++V +PI+T SDCEGAGE F VTTL
Sbjct: 156 LAYATHTFFNKHGFLYVHTPIVTTSDCEGAGEMFQVTTL 194
>Medtr8g102050.2 | cytoplasmic asparagine-tRNA ligase | HC |
chr8:42909869-42915043 | 20130731
Length = 551
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/117 (66%), Positives = 95/117 (81%), Gaps = 1/117 (0%)
Query: 259 AIPKINDKLIDWSQDFFGKPAFLTVSGQLNAETYATALSDVYTFGPTFRAENSNTSRHLA 318
IP+ + K +D+++DFF + AFLTVSGQL E+YA ALS VYTFGPTFRAENS+TSRHLA
Sbjct: 269 GIPRKDGK-VDYTKDFFARQAFLTVSGQLQVESYACALSRVYTFGPTFRAENSHTSRHLA 327
Query: 319 EFWMIEPELAFADLNDDMACATAYLQFVIRYILDNCKEDMEFFNTWTDKGIIDRLSV 375
EFWM+EPE+AFADL DDM CA AY++F+ R++LDNC EDMEF DKG IDRL +
Sbjct: 328 EFWMVEPEIAFADLEDDMKCAEAYVKFLCRWLLDNCLEDMEFMADKFDKGCIDRLKM 384
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 97/159 (61%), Gaps = 6/159 (3%)
Query: 91 GWVRTLRP--QATVTFLEINDGSCLSNMQCVLDPEVEGYDQVGLITTGASVWVQG-VVVE 147
GWV+T R + FLE+NDGSC N+Q ++D + Q L+ TG V V+G + +
Sbjct: 38 GWVKTGRKADKDAFAFLELNDGSCAGNLQVIIDASLADLGQ--LVQTGTCVVVEGHLKLP 95
Query: 148 SQGAXXXXXXXXXXXXXXXXSDPS-FPIQKKRVSNEFLRTKAHLRPRTNTFGAVARVRNA 206
GA DP+ +P+ K R++ E LR HLR RTNT AVAR+RNA
Sbjct: 96 PSGAKQKIELRAEEVLHVGPVDPAKYPLPKTRLTLESLRDFVHLRSRTNTISAVARIRNA 155
Query: 207 LAYATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTL 245
LAYATH FF ++GF++V +PI+T SDCEGAGE F VTTL
Sbjct: 156 LAYATHTFFNKHGFLYVHTPIVTTSDCEGAGEMFQVTTL 194
>Medtr8g011530.1 | asparagine-tRNA ligase | HC |
chr8:3134854-3130862 | 20130731
Length = 633
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 161/341 (47%), Gaps = 63/341 (18%)
Query: 94 RTLRPQATVTFLEINDGSCLSNMQCVLDPEVEGYDQVGLITTGASVWVQGVVVE--SQGA 151
RTL P+++ +L + DGS ++ +Q V+D + L+ TG + V+G++ ++G
Sbjct: 129 RTLPPKSSTVYLLLTDGSSVATLQVVVDSSITTPSL--LLPTGTCILVEGLLERPATEGK 186
Query: 152 XXXXXXXXXXXXXXXXSDPSFPIQKKRVSNEFLRTKAHLRPRTNTFGAVARVRNALAYAT 211
+P+ KKRV + LR +H RPRT T V RVR+AL++AT
Sbjct: 187 HAIQLKADKVLHIGTVDIGKYPLSKKRVPLDALRDFSHFRPRTTTVATVMRVRSALSFAT 246
Query: 212 ------HKFFQEN----------GF------------VWVSSPIITASDCEGAGEQFC-- 241
H FF GF V + T + EG +
Sbjct: 247 HSFFKEHAFFDVQVPTITTTDCEGFGNMFQVTTTVNQKAVKEKLSTIYETEGVSLEIVKE 306
Query: 242 --------VTTLI--PSSHESADSPIDAIPKIN-------------------DKLIDWSQ 272
V TL S+ E+ + I + K N D+ +D S+
Sbjct: 307 AAKEKSKLVETLKRSESNREALAAAIQDLKKTNELASQLEVREKKKLGTSLKDEKLDTSK 366
Query: 273 DFFGKPAFLTVSGQLNAETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 332
DFF +LTVSG+L+ E+YA AL +VY+FGP F A+ +++++H AE WM+E E+AFA+L
Sbjct: 367 DFFSSQTYLTVSGRLHLESYACALGNVYSFGPRFHADKTDSAKHAAEMWMVEAEMAFAEL 426
Query: 333 NDDMACATAYLQFVIRYILDNCKEDMEFFNTWTDKGIIDRL 373
D M CA +++ +L+NC EDM+F D IDRL
Sbjct: 427 KDSMNCANDLFKYLCERVLENCSEDMKFVAKRIDHTCIDRL 467