Miyakogusa Predicted Gene
- Lj4g3v1248000.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1248000.1 Non Characterized Hit- tr|I3SF84|I3SF84_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,96.59,1.99993e-41,LSM,Ribonucleoprotein LSM domain; SMALL NUCLEAR
RIBONUCLEOPROTEIN E,NULL; snRNP Sm proteins,Ribonucl,CUFF.48712.1
(88 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g072530.1 | small nuclear ribonucleoprotein | HC | chr5:30... 175 1e-44
Medtr2g104440.1 | small nuclear ribonucleoprotein | HC | chr2:44... 175 1e-44
Medtr4g094600.1 | u6 snRNA-associated-like-Smprotein | HC | chr4... 47 3e-06
>Medtr5g072530.1 | small nuclear ribonucleoprotein | HC |
chr5:30881816-30885244 | 20130731
Length = 88
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/88 (97%), Positives = 87/88 (98%)
Query: 1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 61 NVKKNSRKTLGRILLKGDNITLMMNTGK 88
NVKK S+KTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 88
>Medtr2g104440.1 | small nuclear ribonucleoprotein | HC |
chr2:44988145-44990288 | 20130731
Length = 88
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/88 (97%), Positives = 87/88 (98%)
Query: 1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 61 NVKKNSRKTLGRILLKGDNITLMMNTGK 88
NVKK S+KTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 88
>Medtr4g094600.1 | u6 snRNA-associated-like-Smprotein | HC |
chr4:38346646-38342453 | 20130731
Length = 87
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKNSRKT--L 70
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E + R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 65
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ G
Sbjct: 66 DQILLNGNNIAILVPGGS 83