Miyakogusa Predicted Gene

Lj4g3v1218370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1218370.1 CUFF.48659.1
         (103 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g040350.1 | tRNA-binding region domain protein | HC | chr4...   155   6e-39
Medtr4g077700.1 | methionine-tRNA ligase, putative | HC | chr4:2...    52   2e-07
Medtr4g122580.1 | methionine-tRNA ligase, putative | HC | chr4:5...    50   7e-07

>Medtr4g040350.1 | tRNA-binding region domain protein | HC |
           chr4:14464296-14468345 | 20130731
          Length = 257

 Score =  155 bits (393), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 80/103 (77%), Gaps = 1/103 (0%)

Query: 1   MRGVKSSGMLMAASDAKHENVELLFPPEEATPGERIWFGSEDEKDXXXXXXXXXXXXXXX 60
           MRGVKSSGMLMAASD+KHENVELL PPEEATPGERIWFGSEDEKD               
Sbjct: 156 MRGVKSSGMLMAASDSKHENVELLCPPEEATPGERIWFGSEDEKDNQPDAAKPNQIQKKK 215

Query: 61  XWELVQPHLKTDASCTALLGGVHVMRTSLGSVACQSLQNANIS 103
            WE VQPHLKTD SCTA+LG  HVMRTS GSV CQSLQNANIS
Sbjct: 216 IWESVQPHLKTDGSCTAMLGE-HVMRTSAGSVVCQSLQNANIS 257


>Medtr4g077700.1 | methionine-tRNA ligase, putative | HC |
           chr4:29775248-29762938 | 20130731
          Length = 806

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 1   MRGVKSSGMLMAASDAKHENVELLFPPEEATPGERIWF-GSEDEKDXXXXXXXXXXXXXX 59
           MRG+KS  M++AAS+A H  VEL+ PP  A  GERI F G E   D              
Sbjct: 711 MRGIKSQAMVLAASNADHTKVELVEPPSSALVGERITFPGYEGNPD-------ELLNPKK 763

Query: 60  XXWELVQPHLKTDASCTALLGGVHVMRTSLGSVACQSLQNANI 102
             WE +Q  L T+    A    +  + TS G     S+ N  I
Sbjct: 764 KVWETLQVDLHTNEKLEACYKDIP-LTTSAGICTVPSIGNGTI 805


>Medtr4g122580.1 | methionine-tRNA ligase, putative | HC |
           chr4:50559328-50552361 | 20130731
          Length = 799

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 8/78 (10%)

Query: 1   MRGVKSSGMLMAASDAKHENVELLFPPEEATPGERIWF-GSEDEKDXXXXXXXXXXXXXX 59
           MRG+KS  M++AAS+  H  VEL+ PP  A  GERI F G E + D              
Sbjct: 705 MRGIKSQAMVLAASNDDHTKVELVEPPSSACVGERITFPGHEGKPD-------ELLNPKK 757

Query: 60  XXWELVQPHLKTDASCTA 77
             WE +Q  L T+    A
Sbjct: 758 KIWETLQTELHTNEELVA 775