Miyakogusa Predicted Gene

Lj4g3v1212380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1212380.1 Non Characterized Hit- tr|I3SGH2|I3SGH2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.61,0,Chlorophyll a-b binding protein,Chlorophyll a/b binding
protein domain; seg,NULL,CUFF.48646.1
         (259 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g099340.1 | light harvesting-like protein | HC | chr4:4121...   346   1e-95
Medtr4g099330.1 | light harvesting-like protein | HC | chr4:4121...   126   2e-29
Medtr4g099340.2 | light harvesting-like protein | HC | chr4:4121...   112   5e-25

>Medtr4g099340.1 | light harvesting-like protein | HC |
           chr4:41218774-41216073 | 20130731
          Length = 258

 Score =  346 bits (887), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 183/260 (70%), Positives = 200/260 (76%), Gaps = 8/260 (3%)

Query: 3   TMSTTMASFSPLTRFSAT---LSSSNSKPHLTQNHFFFTLRPKNLPLSPLKWKXXXXXXX 59
           TMS +MASFSPLTR S T   LS  +  P+ + NHF  TLRPKNLPL  L          
Sbjct: 4   TMSMSMASFSPLTRISTTYSSLSKPHHHPNHSNNHFTLTLRPKNLPLLSLS---PLRASA 60

Query: 60  XXXXXXXXXVESPPEKISVGTNGXXXXXXXXXXEELKIPGGFEDPRWVAGTWDLMQFRKN 119
                    V+ PPE ISVGTNG          EE+K+   F DPRWVAGTWDLMQFRKN
Sbjct: 61  GTSDSAETAVKPPPENISVGTNGSASAVPVA--EEVKVSSAFVDPRWVAGTWDLMQFRKN 118

Query: 120 GSTDWDAVIDAEARRRKWLQDNPESSSNENPVVFDTSIVPWWAWIKRFHLPEAERLNGRA 179
           G+TDWDAVIDAEARRRKWL+ NPESSSN+NPVVFDTSIVPWWAWIKRFHLPEAE LNGRA
Sbjct: 119 GTTDWDAVIDAEARRRKWLETNPESSSNDNPVVFDTSIVPWWAWIKRFHLPEAELLNGRA 178

Query: 180 AMIGFFMAYLVDSLTGVGLVDQTNNFVCKTLLFIAVAGVLLIRKNEDLENLKKLFDETTF 239
           AMIGFFM YLVDSLTGVGLVDQ NNF CKTLLF+AV GVLLIRKNED++  KKL +ETTF
Sbjct: 179 AMIGFFMTYLVDSLTGVGLVDQMNNFFCKTLLFVAVGGVLLIRKNEDVDTFKKLLEETTF 238

Query: 240 YDKQWQATWQDENSNTSKKE 259
           YDKQWQATWQDENS+TS+K+
Sbjct: 239 YDKQWQATWQDENSSTSRKD 258


>Medtr4g099330.1 | light harvesting-like protein | HC |
           chr4:41215416-41213948 | 20130731
          Length = 108

 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 83/128 (64%), Gaps = 34/128 (26%)

Query: 131 EARRRKWLQDNPESSSNENPVVFDTSIVPWWAWIKRFHLPEAERLNGRAAMIGFFMAYLV 190
           EARRR WL+ +PES+SN+N V                       L  RAAMIGFFM YLV
Sbjct: 14  EARRRNWLETSPESTSNDNYV-----------------------LKARAAMIGFFMTYLV 50

Query: 191 DSLTGVGLVDQTNNFVCKTLLFIAVAGVLLIRKNEDLENLKKLFDETTFYDKQWQATWQD 250
           DSLTGVGLVDQ NNF CKTLLF+ VAG+LLIR        KK+ +ETTFYDK  QAT  D
Sbjct: 51  DSLTGVGLVDQMNNF-CKTLLFVEVAGLLLIR--------KKVLEETTFYDK--QATLLD 99

Query: 251 ENSNTSKK 258
           ENS++SKK
Sbjct: 100 ENSSSSKK 107


>Medtr4g099340.2 | light harvesting-like protein | HC |
           chr4:41218774-41217401 | 20130731
          Length = 181

 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/131 (53%), Positives = 78/131 (59%), Gaps = 8/131 (6%)

Query: 3   TMSTTMASFSPLTRFSAT---LSSSNSKPHLTQNHFFFTLRPKNLPLSPLKWKXXXXXXX 59
           TMS +MASFSPLTR S T   LS  +  P+ + NHF  TLRPKN    PL          
Sbjct: 4   TMSMSMASFSPLTRISTTYSSLSKPHHHPNHSNNHFTLTLRPKN---LPLLSLSPLRASA 60

Query: 60  XXXXXXXXXVESPPEKISVGTNGXXXXXXXXXXEELKIPGGFEDPRWVAGTWDLMQFRKN 119
                    V+ PPE ISVGTNG          EE+K+   F DPRWVAGTWDLMQFRKN
Sbjct: 61  GTSDSAETAVKPPPENISVGTNGSASAVPVA--EEVKVSSAFVDPRWVAGTWDLMQFRKN 118

Query: 120 GSTDWDAVIDA 130
           G+TDWDAVIDA
Sbjct: 119 GTTDWDAVIDA 129