Miyakogusa Predicted Gene

Lj4g3v1212300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1212300.1 Non Characterized Hit- tr|E1ZMU7|E1ZMU7_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,30.99,0.0000004,seg,NULL,gene.g54218.t1.1
         (209 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g099300.1 | tRNA/rRNA methyltransferase SpoU family protei...   323   8e-89

>Medtr4g099300.1 | tRNA/rRNA methyltransferase SpoU family protein |
            HC | chr4:41173123-41201425 | 20130731
          Length = 1837

 Score =  323 bits (828), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 159/191 (83%), Positives = 166/191 (86%)

Query: 1    MWNLVHSSWILHVNCNKRRVASIAALLSSVLHPFLFNDERMHQTDNAPGPLKWFIENLLE 60
            MWNLVHSSWILH+NCNKRRVASIAALLS+VLHP LFNDE MHQ DNAPGPLKWFIENLLE
Sbjct: 1153 MWNLVHSSWILHINCNKRRVASIAALLSAVLHPLLFNDESMHQKDNAPGPLKWFIENLLE 1212

Query: 61   EGTKSPRTIRXXXXXXXXXXXXNPRIIRFYLKELKLLSLYGSVAFDEDFEAELGDNNDAR 120
            EGTKSPRTIR            NP II+FYLKELKLLSLYGSVAFDEDFE EL DNNDAR
Sbjct: 1213 EGTKSPRTIRLAALHLTGLWLSNPMIIKFYLKELKLLSLYGSVAFDEDFEGELADNNDAR 1272

Query: 121  LEVSLLARSPDPELTEAFINTELYARVSVAVMFCKLADLACMVGSPDENAHCKAALESGK 180
            LEVSLLA SPDPELTEAFINTELYARVSVAV+F KL DLACMVGSP E+ +C AAL+SGK
Sbjct: 1273 LEVSLLAGSPDPELTEAFINTELYARVSVAVLFYKLTDLACMVGSPKEDTNCIAALDSGK 1332

Query: 181  SFLLELLDSAV 191
            SFLL LLDSAV
Sbjct: 1333 SFLLVLLDSAV 1343