Miyakogusa Predicted Gene

Lj4g3v1202110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1202110.1 Non Characterized Hit- tr|I1NIT5|I1NIT5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.33616
PE,87.5,0.0000000000005, ,CUFF.48617.1
         (53 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g081290.1 | zeta-carotene desaturase | HC | chr1:36179133-...    78   2e-15
Medtr1g081290.2 | zeta-carotene desaturase | HC | chr1:36179133-...    77   3e-15

>Medtr1g081290.1 | zeta-carotene desaturase | HC |
           chr1:36179133-36173413 | 20130731
          Length = 579

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 37/40 (92%)

Query: 4   EGLEVTWSSVVKIGQSLYAEGLGKDPFRPDQKTQVKNFFL 43
           +GLEVTWSSVVKIGQSLY EG GKDPFRPDQKT VKNFFL
Sbjct: 479 QGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFL 518


>Medtr1g081290.2 | zeta-carotene desaturase | HC |
           chr1:36179133-36173413 | 20130731
          Length = 557

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 37/40 (92%)

Query: 4   EGLEVTWSSVVKIGQSLYAEGLGKDPFRPDQKTQVKNFFL 43
           +GLEVTWSSVVKIGQSLY EG GKDPFRPDQKT VKNFFL
Sbjct: 479 QGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFL 518