Miyakogusa Predicted Gene

Lj4g3v1140680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1140680.1 tr|A4RTC1|A4RTC1_OSTLU Predicted protein
(Fragment) OS=Ostreococcus lucimarinus (strain CCE9901)
GN=,35.16,1e-17,TLD,TLDc,CUFF.48520.1
         (230 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g098620.1 | TLD protein | HC | chr4:40648754-40649981 | 20...   422   e-118

>Medtr4g098620.1 | TLD protein | HC | chr4:40648754-40649981 |
           20130731
          Length = 229

 Score =  422 bits (1086), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/230 (89%), Positives = 216/230 (93%), Gaps = 1/230 (0%)

Query: 1   MASCIPNSLSFQGRKTSPNCLFGWNIGRKGVADNKPQINYHDIDLTFSTSLVDKTFLKGK 60
           MASCI NSLSFQ RKTSP CLFGWNIGRK V D+KPQI YHDIDLTFSTSLV+KTFLKGK
Sbjct: 1   MASCISNSLSFQWRKTSPYCLFGWNIGRKRV-DDKPQIKYHDIDLTFSTSLVNKTFLKGK 59

Query: 61  ELKCCYRATIDGFSAADFHNCCDFKGPCVIIGYTNKNFKFGAFNPEGYRSTDDYYDTFDP 120
           ELKCCYRATIDGFSA +FH CCDFKGPCVIIGYT+ +FKFGAFNPEGYRSTDDYY+TFD 
Sbjct: 60  ELKCCYRATIDGFSATNFHQCCDFKGPCVIIGYTDNSFKFGAFNPEGYRSTDDYYETFDA 119

Query: 121 FLFYWADIEAEPIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNS 180
           FLFYW + + EPI+LPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNS
Sbjct: 120 FLFYWIENKTEPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNS 179

Query: 181 GIGDLRQAKSRLGLSYAKREDGKESIFGDESRAVLQEVEVFCSPKIASLY 230
           G+GDLRQAKSRLGLSYAKREDGKESIFGDESRA +QEVEVFCSPKIASLY
Sbjct: 180 GVGDLRQAKSRLGLSYAKREDGKESIFGDESRATIQEVEVFCSPKIASLY 229