Miyakogusa Predicted Gene

Lj4g3v1140610.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1140610.3 tr|A9RPY1|A9RPY1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_68989
,35.29,1e-18,no description,NULL; UBIQUITIN_2,Ubiquitin supergroup;
Ubiquitin-like,NULL; seg,NULL,CUFF.48543.3
         (170 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g098640.2 | ubiquitin family protein | HC | chr4:40657026-...   274   4e-74
Medtr4g098640.1 | ubiquitin family protein | HC | chr4:40657028-...   271   2e-73

>Medtr4g098640.2 | ubiquitin family protein | HC |
           chr4:40657026-40661775 | 20130731
          Length = 205

 Score =  274 bits (700), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 135/170 (79%), Positives = 148/170 (87%)

Query: 1   MEDIVQEHESEKKVEIILKTIGPARPSRLLVPSSIKVRDLRRLIASNDHLPIDNLSLILR 60
           M DIV EHESEK VEI+LKTIGPA PSRL VPSSIKVRDLRRLIASN HLPIDNLSLILR
Sbjct: 1   MVDIVSEHESEKTVEIVLKTIGPAPPSRLRVPSSIKVRDLRRLIASNGHLPIDNLSLILR 60

Query: 61  GTALCDEKNGEDIRVELNDGDCLIIAVKPKPPVKAGFXXXXXXXXLKFQLPRTSSRWKKR 120
           GTALCD KNG+D+R++LNDGD LI+AVKPKPPVK G         LKFQLP++SSRWKK+
Sbjct: 61  GTALCDLKNGDDVRMQLNDGDSLIVAVKPKPPVKDGHDNDDDDEDLKFQLPQSSSRWKKK 120

Query: 121 LYSFLRDNLKLPDILLMAIFTLSLRAWIFIIMWFILAPVAHRWDLGPLYV 170
           LYSFL D LKLPDI+LM IFTLSL+AW+ IIMWFILAPVAHRWDLGPLY+
Sbjct: 121 LYSFLHDKLKLPDIILMVIFTLSLKAWVLIIMWFILAPVAHRWDLGPLYL 170


>Medtr4g098640.1 | ubiquitin family protein | HC |
           chr4:40657028-40661762 | 20130731
          Length = 221

 Score =  271 bits (694), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/170 (79%), Positives = 148/170 (87%)

Query: 1   MEDIVQEHESEKKVEIILKTIGPARPSRLLVPSSIKVRDLRRLIASNDHLPIDNLSLILR 60
           M DIV EHESEK VEI+LKTIGPA PSRL VPSSIKVRDLRRLIASN HLPIDNLSLILR
Sbjct: 1   MVDIVSEHESEKTVEIVLKTIGPAPPSRLRVPSSIKVRDLRRLIASNGHLPIDNLSLILR 60

Query: 61  GTALCDEKNGEDIRVELNDGDCLIIAVKPKPPVKAGFXXXXXXXXLKFQLPRTSSRWKKR 120
           GTALCD KNG+D+R++LNDGD LI+AVKPKPPVK G         LKFQLP++SSRWKK+
Sbjct: 61  GTALCDLKNGDDVRMQLNDGDSLIVAVKPKPPVKDGHDNDDDDEDLKFQLPQSSSRWKKK 120

Query: 121 LYSFLRDNLKLPDILLMAIFTLSLRAWIFIIMWFILAPVAHRWDLGPLYV 170
           LYSFL D LKLPDI+LM IFTLSL+AW+ IIMWFILAPVAHRWDLGPLY+
Sbjct: 121 LYSFLHDKLKLPDIILMVIFTLSLKAWVLIIMWFILAPVAHRWDLGPLYI 170