Miyakogusa Predicted Gene
- Lj4g3v1118440.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1118440.2 Non Characterized Hit- tr|I3SCE2|I3SCE2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,25.97,0.00000000002, ,CUFF.48500.2
(149 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g062030.1 | replication factor-A carboxy-terminal domain p... 65 3e-11
Medtr6g051890.1 | replication factor-A carboxy-terminal domain p... 59 2e-09
Medtr5g078250.1 | replication factor-A carboxy-terminal domain p... 57 5e-09
Medtr1g050500.1 | replication factor-A carboxy-terminal domain p... 56 1e-08
Medtr1g075850.1 | replication factor-A carboxy-terminal domain p... 53 1e-07
Medtr4g046077.1 | replication factor-A carboxy-terminal domain p... 51 3e-07
>Medtr8g062030.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:25901653-25904109 | 20130731
Length = 575
Score = 64.7 bits (156), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 28/155 (18%)
Query: 1 MRCFLYRELAELLMLNLCSNWTKRPVLILQFIQVRNVNGLLFMRTLPHTSKLFINP---- 56
+ C L+ E L + + PV+++QF +V+ ++ + T++L +NP
Sbjct: 175 IECALFGEYVALWNGFVSKGFEGLPVVVVQFAKVKIFRDKATLQNVKGTTRLIVNPDVPE 234
Query: 57 -VQF------LRPRVPEV----------NMKQDMLNLHPKKTISQL--SESDGFSQEAIY 97
+ F L +VP +M+++ L ++PKKTISQL SE DGF +
Sbjct: 235 VIAFKDRLIGLGIQVPPTLTVLGGPSKPSMEEEFLRMYPKKTISQLFNSEEDGF-----F 289
Query: 98 IVHGGIVDALKNEAWTYPSCICHGELIVRTGVYEC 132
+V + ++ E W YP+C CH + +G Y C
Sbjct: 290 VVSAIVSGFVEGEEWWYPACKCHRSVTADSGAYYC 324
>Medtr6g051890.1 | replication factor-A carboxy-terminal domain
protein | HC | chr6:18071124-18068908 | 20130731
Length = 399
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 55 NPVQFLRPRVPEVNMKQDMLNLHPKKTISQLSESDGFSQEAIYIVHGGIVDAL-KNEAWT 113
PV F PRV M+ L L+P+KTI++L G S++ +++V GIVD L ++E W
Sbjct: 166 EPVPFPGPRV-RPYMEDAFLGLYPQKTIAELQ---GTSKDGLFVV-SGIVDGLVEDEEWY 220
Query: 114 YPSCICHGELIVRTGVYECHLPAVFLHH 141
YP+C CH L+ G Y C A + H
Sbjct: 221 YPACTCHRSLMPDYGAYYCKDCAEHVFH 248
>Medtr5g078250.1 | replication factor-A carboxy-terminal domain
protein | LC | chr5:33436158-33438920 | 20130731
Length = 517
Score = 57.4 bits (137), Expect = 5e-09, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 23/150 (15%)
Query: 3 CFLYRELAELLMLNLCSNWTKRPVLILQFIQVRNVNGLLFMRTLPHTSKLFINP------ 56
C L+ + + L + + P++++QF +V+ ++ + +T+++ INP
Sbjct: 177 CALFGQYVDTLNKLMGKSGGGMPIILVQFAKVKIFRDKASLQNVMNTTRILINPPIEQAD 236
Query: 57 -----VQFLR------PRV---PEVNMKQDMLNLHPKKTISQLSESDGFSQEAIYIVHGG 102
V F PR+ +V++++D L PKKT+ QL + +Y GG
Sbjct: 237 QIRKSVTFGSMDVSSVPRIGARSKVSLEEDFLRTFPKKTLEQLHSTFEDGVFVVYATIGG 296
Query: 103 IVDALKNEAWTYPSCICHGELIVRTGVYEC 132
+VD +E W YP+C CH + +G + C
Sbjct: 297 LVD---HEDWWYPACKCHRSVSADSGAFYC 323
>Medtr1g050500.1 | replication factor-A carboxy-terminal domain
protein | LC | chr1:19683996-19681538 | 20130731
Length = 543
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 24/151 (15%)
Query: 3 CFLYRELAELLMLNLCSNWTKRPVLILQFIQVRNVNGLLFMRTLPHTSKLFINP-----V 57
C LY L + ++ PV++LQF ++ G ++ + ++L +NP +
Sbjct: 96 CVLYGAYVGLFQEMVNNSSPGLPVVVLQFAKINRETGAFYLESFKDVTRLLLNPHIGEAL 155
Query: 58 QF-------------LRPRVPEVNMKQD---MLNLHPKKTISQLSESDGFSQEAIYIVHG 101
QF +R RV + D ++P K + +L +S ++ +++V+
Sbjct: 156 QFRNDILRSDPCCPLVRWRVVRSLITSDTSQFRRMYPVKKVYELVQS---VEDGLFVVYA 212
Query: 102 GIVDALKNEAWTYPSCICHGELIVRTGVYEC 132
+V+ +++ W YP C+C L +R G Y C
Sbjct: 213 EVVECIESHTWWYPMCVCQRILPMRNGAYYC 243
>Medtr1g075850.1 | replication factor-A carboxy-terminal domain
protein | LC | chr1:33615520-33612872 | 20130731
Length = 528
Score = 52.8 bits (125), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 74/150 (49%), Gaps = 23/150 (15%)
Query: 3 CFLYRELAELLMLNLCSNWTKRPVLILQFIQVRNVNGLLFMRTLPHTSKLFIN-PVQF-- 59
C L+ + + L + + P++++QF +V+ ++ + +T+ + IN P++
Sbjct: 171 CALFGQYVDTLNKLMGKSAGGMPIILVQFAKVKIFRDKASLQNVINTTWILINLPIEQDD 230
Query: 60 -LR-------------PRV---PEVNMKQDMLNLHPKKTISQLSESDGFSQEAIYIVHGG 102
+R PR+ +V++++D L +PKKT+ QL + + +++V+
Sbjct: 231 QVRKSVTFGSTDVSSIPRIGSRSKVSLEEDFLRTYPKKTLEQLHST---FDDGVFVVYST 287
Query: 103 IVDALKNEAWTYPSCICHGELIVRTGVYEC 132
I + +E W YP+C CH + +G + C
Sbjct: 288 ISGLVDHEDWWYPACKCHRSVSADSGAFYC 317
>Medtr4g046077.1 | replication factor-A carboxy-terminal domain
protein | LC | chr4:16158485-16160769 | 20130731
Length = 405
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 2 RCFLYRELAELLMLNLCSNWTKRPVLILQFIQVRNVNGL-LFMRTLPHTSKLFINPVQFL 60
C L+ + + L + PV+++QF +V+ G+ L + + F++ V
Sbjct: 74 ECALFGKYVDALNKLMRKAVDGMPVVLVQFAKVKIFKGISLTISQVIVLFGYFVSSVGIN 133
Query: 61 RPRVPEV------NMKQDMLNLHPKKTISQLSESDGFSQEAIYIVHGGIVDALKNEAWTY 114
VP++ ++++D L++HPKKT++QL ++ +Y G VD + W Y
Sbjct: 134 ISSVPKLGPCVRASVQEDFLHMHPKKTLAQLHDTPEDGTFVVYATFNGFVDG--EDCW-Y 190
Query: 115 PSCICHGELIVRTGVYEC 132
P+C CH + + Y C
Sbjct: 191 PACKCHRSVAPDSEAYYC 208