Miyakogusa Predicted Gene
- Lj4g3v1118390.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1118390.1 tr|G7I4W1|G7I4W1_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_1g075850 PE=4
SV=1,22.95,6e-17,seg,NULL; Rep_fac-A_C,Replication factor A,
C-terminal; Nucleic acid-binding proteins,Nucleic acid-b,CUFF.48550.1
(560 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g078250.1 | replication factor-A carboxy-terminal domain p... 112 1e-24
Medtr8g062030.1 | replication factor-A carboxy-terminal domain p... 110 4e-24
Medtr4g046077.1 | replication factor-A carboxy-terminal domain p... 100 4e-21
Medtr4g040040.1 | replication factor-A carboxy-terminal domain p... 90 6e-18
Medtr1g075850.1 | replication factor-A carboxy-terminal domain p... 87 3e-17
Medtr4g036240.2 | replication factor-A carboxy-terminal domain p... 80 6e-15
Medtr4g036240.1 | replication factor-A carboxy-terminal domain p... 80 8e-15
Medtr3g056270.1 | replication factor-A carboxy-terminal domain p... 79 9e-15
Medtr2g048560.1 | replication factor-A carboxy-terminal domain p... 79 1e-14
Medtr0042s0170.1 | replication factor-A carboxy-terminal domain ... 78 3e-14
Medtr6g052340.1 | DNA primase | LC | chr6:18273765-18278897 | 20... 73 7e-13
Medtr4g036240.3 | replication factor-A carboxy-terminal domain p... 66 8e-11
Medtr6g051890.1 | replication factor-A carboxy-terminal domain p... 65 2e-10
Medtr2g008650.1 | replication factor-A carboxy-terminal domain p... 60 7e-09
Medtr8g479260.1 | replication factor-A carboxy-terminal domain p... 60 7e-09
Medtr2g048550.1 | replication factor-A carboxy-terminal domain p... 58 2e-08
Medtr6g445520.1 | replication factor-A carboxy-terminal domain p... 58 3e-08
Medtr4g134870.1 | AP2 domain class transcription factor | LC | c... 53 7e-07
Medtr3g081610.1 | transmembrane protein, putative | LC | chr3:36... 50 5e-06
>Medtr5g078250.1 | replication factor-A carboxy-terminal domain
protein | LC | chr5:33436158-33438920 | 20130731
Length = 517
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 127/305 (41%), Gaps = 49/305 (16%)
Query: 13 YLVDVIGILSAASKEKLLIKGNHVYKMMEIDLMDNTGKCHCVLIGDAVQTLSDYLCLNWV 72
YLVDV+G ++ S E+ ++ V KM+ ++ D +GKC C L G V TL+ + +
Sbjct: 137 YLVDVLGFMTGISVEREYVRDGKVTKMVIFEITDASGKCECALFGQYVDTLNKLMGKSGG 196
Query: 73 LRPVVGLRFVDVRRVEGKFTVQIIPYVSRIYINQVFE----------------------- 109
P++ ++F V+ K ++Q + +RI IN E
Sbjct: 197 GMPIILVQFAKVKIFRDKASLQNVMNTTRILINPPIEQADQIRKSVTFGSMDVSSVPRIG 256
Query: 110 -----------------------HLMFNDGVSVVSGLVISFIKDSPWWYVSCRCHTEVIP 146
H F DGV VV + + WWY +C+CH V
Sbjct: 257 ARSKVSLEEDFLRTFPKKTLEQLHSTFEDGVFVVYATIGGLVDHEDWWYPACKCHRSVSA 316
Query: 147 EDDVYKCHRCYRNIAKTIRRYRIRLELFDGTDIAMFVLNDAVVSELVGLPCEKLLNFIED 206
+ + C C +++ + + R+R+++ + D T++ +FV+ D + L+ PC L++ +
Sbjct: 317 DSGAFYCKGCAKHVFQMVPRFRVKVNVSDATNVGVFVVFDGDMQNLLNTPCSSLVSVAKA 376
Query: 207 PLVPQYPTXXXXXXXXXXXXXXVR-IGGQMSYNGERIYEVLRLCSDADVIAMFNSGIAII 265
YP + + ++G + V R+C D +I F+
Sbjct: 377 ENAGHYPPEFEKLKGKKMLFKVEKCTSSSIFFDGS--FRVKRVCDDPAIIQSFHFVGGQC 434
Query: 266 TPSKD 270
TPSK+
Sbjct: 435 TPSKE 439
>Medtr8g062030.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:25901653-25904109 | 20130731
Length = 575
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 143/316 (45%), Gaps = 52/316 (16%)
Query: 3 NITNVGPNFGYLVDVIGILSAASKEKLLIKGNHVYKMMEIDLMDNTGKCHCVLIGDAVQT 62
+++N + YLVDV+G+++A S+E+ ++ V KM+ ++ D++GK C L G+ V
Sbjct: 127 DVSNHTVEYDYLVDVMGLVTAVSEEREYVRDGSVTKMIIFEVTDHSGKIECALFGEYVAL 186
Query: 63 LSDYLCLNWVLRPVVGLRFVDVRRVEGKFTVQIIPYVSRIYIN----------------- 105
+ ++ + PVV ++F V+ K T+Q + +R+ +N
Sbjct: 187 WNGFVSKGFEGLPVVVVQFAKVKIFRDKATLQNVKGTTRLIVNPDVPEVIAFKDRLIGLG 246
Query: 106 -QVFEHL--------------------------MFN---DGVSVVSGLVISFIKDSPWWY 135
QV L +FN DG VVS +V F++ WWY
Sbjct: 247 IQVPPTLTVLGGPSKPSMEEEFLRMYPKKTISQLFNSEEDGFFVVSAIVSGFVEGEEWWY 306
Query: 136 VSCRCHTEVIPEDDVYKCHRCYRNIAKTIRRYRIRLELFDGTDIAMFVLNDAVVSELVGL 195
+C+CH V + Y C C +++ + + RY+I+L + DGT ++FVL D+ V L+
Sbjct: 307 PACKCHRSVTADSGAYYCKGCDKHVIQMVPRYKIKLRVDDGTGDSVFVLFDSDVHYLLEK 366
Query: 196 PCEKLLNFIEDPLVPQYPTXXXXXXXXXXXXXXVR--IGGQMSYNGERIYEVLRLCSDAD 253
C L+ + V YP + I G ++G Y V R+C+D+
Sbjct: 367 QCSVLVAKSKGDDVGFYPPEIVMLKGKRFLFKVDKPVISGGF-FDGS--YRVKRVCADSS 423
Query: 254 VIAMFNSGIAIITPSK 269
++A F TP++
Sbjct: 424 IVAKFAMNGYNYTPTE 439
>Medtr4g046077.1 | replication factor-A carboxy-terminal domain
protein | LC | chr4:16158485-16160769 | 20130731
Length = 405
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 33/226 (14%)
Query: 10 NFGYLVDVIGILSAASKEKLLIKGNHVYKMMEIDLMDNTGKCHCVLIGDAVQTLSDYLCL 69
++ YLVDV+G+++ S E+ I+ V KM+ L D++G C C L G V L+ +
Sbjct: 32 DYDYLVDVVGLMTGISNEREYIRDGKVTKMVVFQLTDDSGSCECALFGKYVDALNKLMRK 91
Query: 70 NWVLRPVVGLRFVDVRRVEG-KFTV-QIIP----YVSRIYIN----------------QV 107
PVV ++F V+ +G T+ Q+I +VS + IN +
Sbjct: 92 AVDGMPVVLVQFAKVKIFKGISLTISQVIVLFGYFVSSVGINISSVPKLGPCVRASVQED 151
Query: 108 FEHL-----------MFNDGVSVVSGLVISFIKDSPWWYVSCRCHTEVIPEDDVYKCHRC 156
F H+ DG VV F+ WY +C+CH V P+ + Y C C
Sbjct: 152 FLHMHPKKTLAQLHDTPEDGTFVVYATFNGFVDGEDCWYPACKCHRSVAPDSEAYYCKGC 211
Query: 157 YRNIAKTIRRYRIRLELFDGTDIAMFVLNDAVVSELVGLPCEKLLN 202
+N+ + + RYR+++ + D T +A+FV+ V ++ L C L++
Sbjct: 212 VKNVFQMVPRYRVKINVSDATSVAVFVMFAGDVQNILNLSCSSLVS 257
>Medtr4g040040.1 | replication factor-A carboxy-terminal domain
protein | LC | chr4:14260390-14261092 | 20130731
Length = 168
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 4/168 (2%)
Query: 117 VSVVSGLVISFIKDSPWWYVSCRCHTEVIPEDDVYKCHRCYRNIAKTIRRYRIRLELFDG 176
+S++ V ++ D WW++SC CH +V+P+ Y C RC +++ R+RI + D
Sbjct: 1 MSIIMATVDQYVTDDGWWFLSCICHEQVVPDSPAYYCERCNKHVLMITPRFRITFHVTDN 60
Query: 177 TDIAMFVLNDAVVSELVGLPCEKLLNFIEDPLVPQYPTXXXXXXXXXXXXXXVRIGGQMS 236
T A F+++D+V +E G+PC K+L F E+ + Y V
Sbjct: 61 TGSATFLMHDSVAAEFFGIPCSKMLEFGENVGMSSYVPDELLNMVGKCYLFKVFSKVGAG 120
Query: 237 YNGERIYEVLRLCSDADVIAMFNSGIAII----TPSKDKFIPPFTELE 280
+GE+ Y + ++ D +++ F +++ TPS K++ +L
Sbjct: 121 CDGEKCYPISKINDDEELLGRFKRHNSVVIKLDTPSVSKYMSILEKLH 168
>Medtr1g075850.1 | replication factor-A carboxy-terminal domain
protein | LC | chr1:33615520-33612872 | 20130731
Length = 528
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 119/303 (39%), Gaps = 77/303 (25%)
Query: 13 YLVDVIGILSAASKEKLLIKGNHVYKMMEIDLMDNTGKCHCVLIGDAVQTLSDYLCLNWV 72
YLVDV+G ++ S E+ ++ V KM+ ++ D +GKC C L G V TL+ + +
Sbjct: 131 YLVDVLGFMTDISAEREYVRDGKVTKMVVFEITDASGKCECALFGQYVDTLNKLMGKSAG 190
Query: 73 LRPVVGLRFVDVRRVEGKFTVQIIPYVSRIYINQVFE----------------------- 109
P++ ++F V+ K ++Q + + I IN E
Sbjct: 191 GMPIILVQFAKVKIFRDKASLQNVINTTWILINLPIEQDDQVRKSVTFGSTDVSSIPRIG 250
Query: 110 -----------------------HLMFNDGVSVVSGLVISFIKDSPWWYVSCRCHTEVIP 146
H F+DGV VV + + WWY +C+CH V
Sbjct: 251 SRSKVSLEEDFLRTYPKKTLEQLHSTFDDGVFVVYSTISGLVDHEDWWYPACKCHRSVSA 310
Query: 147 EDDVYKCHRCYRNIAKTIRRYRIRLELFDGTDIAMFVLNDAVVSELVGLPCEKLLNFIED 206
+ + C C +++ + + R+R+++ + D + + +E L +++L IE
Sbjct: 311 DSGAFYCKGCAKHVFQMVPRFRVKVNVSDAENAGHY------PAEFEKLKGKRMLFKIEK 364
Query: 207 PLVPQYPTXXXXXXXXXXXXXXVRIGGQMSYNGERIYEVLRLCSDADVIAMFNSGIAIIT 266
G + ++G + V R+C D +I F++ T
Sbjct: 365 C-----------------------TGRSIFFDGS--FRVKRVCDDPAIIQSFDTLGGQYT 399
Query: 267 PSK 269
PSK
Sbjct: 400 PSK 402
>Medtr4g036240.2 | replication factor-A carboxy-terminal domain
protein | HC | chr4:11830210-11833873 | 20130731
Length = 480
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 114/299 (38%), Gaps = 52/299 (17%)
Query: 13 YLVDVIGILSAASKEKLLIKGNHVYKMMEIDLMDNTGKCHCVLIGDAVQTLSDYLCLNWV 72
YLVDVIG+L+ E+ + K+ I + + K C L G V L+ +L
Sbjct: 57 YLVDVIGMLTGVGTEREYERNGSATKLNVIAMEADGYKLQCTLFGTYVDELNTFLATGET 116
Query: 73 LRPVVGLRFVDVRRVEGKFTVQIIPYVSRIYINQV------------------------- 107
VV ++ V+ + +Q +R+ N V
Sbjct: 117 ANVVVSIQLAKVKVFQDNIHIQNCLNCTRLKFNPVCVEGTAFKNRMIENDDTPSPLTQLA 176
Query: 108 -------FEHLMFN--------------DGVSVVSGLVISFIKDSPWWYVSCRCHTEVIP 146
+ +FN +G+ VV G V + W+Y +C C+ V P
Sbjct: 177 VEPSIDPLQDFLFNTPRTTIQGLKDSQQEGMYVVLGTVKQIVNPENWYYTACMCNKSVYP 236
Query: 147 EDDVYKCHRCYRNIAKTIRRYRIRLELFDGTDIAMFVLNDAVVSELVGLPCEKLL--NFI 204
+ ++ C +C R++ K RY I++ + D +D A FVL D + L C +L +
Sbjct: 237 AEGMHFCEKCNRHVVKVFPRYSIKVRVVDDSDCATFVLFDRDATMLFNKSCADILETHRA 296
Query: 205 EDPLVPQYPTXXXXXXXXXXXXXXVRIGGQMSYNGERIYEVLRLCSDADVIAMFNSGIA 263
++ ++P V +S E+ + V ++C+D +I F + A
Sbjct: 297 DEGVLP----TEIAALVNCTYLFKVEFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWA 351
>Medtr4g036240.1 | replication factor-A carboxy-terminal domain
protein | HC | chr4:11830642-11833873 | 20130731
Length = 560
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 114/299 (38%), Gaps = 52/299 (17%)
Query: 13 YLVDVIGILSAASKEKLLIKGNHVYKMMEIDLMDNTGKCHCVLIGDAVQTLSDYLCLNWV 72
YLVDVIG+L+ E+ + K+ I + + K C L G V L+ +L
Sbjct: 137 YLVDVIGMLTGVGTEREYERNGSATKLNVIAMEADGYKLQCTLFGTYVDELNTFLATGET 196
Query: 73 LRPVVGLRFVDVRRVEGKFTVQIIPYVSRIYINQV------------------------- 107
VV ++ V+ + +Q +R+ N V
Sbjct: 197 ANVVVSIQLAKVKVFQDNIHIQNCLNCTRLKFNPVCVEGTAFKNRMIENDDTPSPLTQLA 256
Query: 108 -------FEHLMFN--------------DGVSVVSGLVISFIKDSPWWYVSCRCHTEVIP 146
+ +FN +G+ VV G V + W+Y +C C+ V P
Sbjct: 257 VEPSIDPLQDFLFNTPRTTIQGLKDSQQEGMYVVLGTVKQIVNPENWYYTACMCNKSVYP 316
Query: 147 EDDVYKCHRCYRNIAKTIRRYRIRLELFDGTDIAMFVLNDAVVSELVGLPCEKLL--NFI 204
+ ++ C +C R++ K RY I++ + D +D A FVL D + L C +L +
Sbjct: 317 AEGMHFCEKCNRHVVKVFPRYSIKVRVVDDSDCATFVLFDRDATMLFNKSCADILETHRA 376
Query: 205 EDPLVPQYPTXXXXXXXXXXXXXXVRIGGQMSYNGERIYEVLRLCSDADVIAMFNSGIA 263
++ ++P V +S E+ + V ++C+D +I F + A
Sbjct: 377 DEGVLP----TEIAALVNCTYLFKVEFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWA 431
>Medtr3g056270.1 | replication factor-A carboxy-terminal domain
protein | HC | chr3:22409504-22413525 | 20130731
Length = 719
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 114/299 (38%), Gaps = 52/299 (17%)
Query: 13 YLVDVIGILSAASKEKLLIKGNHVYKMMEIDLMDNTGKCHCVLIGDAVQTLSDYLCLNWV 72
YLVDVIG+L+ E+ + K+ I + + K C L G V L+ +L
Sbjct: 296 YLVDVIGMLTGVGTEREYERNGSATKLNVIAMEADGYKLQCTLFGTYVDELNTFLATGET 355
Query: 73 LRPVVGLRFVDVRRVEGKFTVQIIPYVSRIYINQV------------------------- 107
VV ++ V+ + +Q +R+ N V
Sbjct: 356 ANVVVSIQLAKVKVFQDNIHIQNCLNCTRLKFNPVCAEGTAFKNRMIENDDTPSPLTQLA 415
Query: 108 -------FEHLMFN--------------DGVSVVSGLVISFIKDSPWWYVSCRCHTEVIP 146
+ +FN +G+ VV G V + W+Y +C C+ V P
Sbjct: 416 VEPSIDPLQDFLFNTPRTTIQGLKDSQQEGMYVVLGTVKQIVNPENWYYTACMCNKSVYP 475
Query: 147 EDDVYKCHRCYRNIAKTIRRYRIRLELFDGTDIAMFVLNDAVVSELVGLPCEKLL--NFI 204
+ ++ C +C R++ K RY I++ + D +D A FVL D + L C +L +
Sbjct: 476 AEGMHFCEKCNRHVVKVFPRYSIKVRVVDDSDCATFVLFDRDATMLFNKSCADILETHRA 535
Query: 205 EDPLVPQYPTXXXXXXXXXXXXXXVRIGGQMSYNGERIYEVLRLCSDADVIAMFNSGIA 263
++ ++P V +S E+ + V ++C+D +I F + A
Sbjct: 536 DEGVLP----TEIGALVNCTYLFKVEFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWA 590
>Medtr2g048560.1 | replication factor-A carboxy-terminal domain
protein | LC | chr2:21416239-21412307 | 20130731
Length = 549
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 99/237 (41%), Gaps = 48/237 (20%)
Query: 13 YLVDVIGILSAASKEKLLIKGNHVYKMMEIDLMDNTGKCHCVLIGDAVQTLSDYLCLNWV 72
YL+DV+G+L A EK + KM+ I+L + + L G V L+ +L
Sbjct: 137 YLIDVMGMLKAVGVEKSYTRNGSQSKMIPIELDYDGFRFKVTLFGPYVDELNAFLASGET 196
Query: 73 LRPVVGLRFVDVRRVEGKFTVQIIPYVSRIYINQVF-------EHLMFND-----GVSVV 120
VV + ++ +G+ T+Q +++ N F + ++ ND G+S +
Sbjct: 197 ENVVVAVLLTKIKIFQGQATIQNTINATKVLFNPTFTAALLLKKRMVENDDSPSPGISKI 256
Query: 121 S-----------------------------------GLVISFIKDSPWWYVSCR-CHTEV 144
+ G V + DS WWY SC C+ +V
Sbjct: 257 TEASKVSVEEDFLNLSPMTTVEGLKDCAEEKCFAVFGTVNVIVDDSDWWYTSCVVCNKKV 316
Query: 145 IPEDDVYKCHRCYRNIAKTIRRYRIRLELFDGTDIAMFVLNDAVVSELVGLPCEKLL 201
P++ +Y C +C +++ RY I++ + D TD A FVL D +EL C ++
Sbjct: 317 YPDEKMYFCSKCNKHVLNVTPRYMIKMRVVDHTDSATFVLFDRDAAELFKKTCADMI 373
>Medtr0042s0170.1 | replication factor-A carboxy-terminal domain
protein | LC | scaffold0042:77181-79334 | 20130731
Length = 400
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 125/282 (44%), Gaps = 31/282 (10%)
Query: 10 NFGYLVDVIGILSAASKEKLLIKGNHVYKMMEI--DLMDNTGKCHCVLIGDAVQTLSDYL 67
++ +LV++IG+++ E+ I+ + + I ++ + GK C L G V L +
Sbjct: 32 DYDHLVEIIGVMTGIYAEREYIRDGKLSPGLVICYVIVLSGGKVECALFGSNVDLLLKIM 91
Query: 68 CLNWVLRPVVGLRFVDVRRVEGKFTVQIIPYVSRIYIN-QVFEHLMFNDGVSVVSGLVIS 126
+ PVV L+FV V+ K ++Q + +RI IN + E + F +G
Sbjct: 92 GKSANGMPVVVLQFVKVKIFRDKVSLQNVLNATRIIINPDIDEAVKFKEG---------- 141
Query: 127 FIKDSPWWYVSCRCHTEVIPEDDVYKCHRCYRNIAKTIRRYRIRLELFDGTDIAMFVLND 186
H V P+ Y C C +++ + + RY++++ + DG +FV+ D
Sbjct: 142 -------------SHRGVTPDSGAYYCKGCSKHVFQMVPRYKVKIRVDDGDGCVVFVVFD 188
Query: 187 AVVSELVGLPCEKLLNFIEDPLVPQYPTXXXXXXXXXXXXXXVRIG-GQMSYNGERIYEV 245
+ L+G C L++ + V YP + + ++G Y V
Sbjct: 189 GDMHNLLGKQCSDLVSAAKAENVGFYPDEHLKLKGMYLLFKVEKSSVASVLFDGS--YRV 246
Query: 246 LRLCSDADVIAMFNSGIAIITPSKDKFIPPFTELEGVLDGAD 287
R+CSDA VI F + + ++ +P +++ GV++ AD
Sbjct: 247 RRICSDAAVIESFTAQATVCV--DEQVVPGPSDVNGVIEAAD 286
>Medtr6g052340.1 | DNA primase | LC | chr6:18273765-18278897 |
20130731
Length = 665
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 1 MENITNVGPNFGYLVDVIGILSAASKEKLLIKGNHVYKMMEIDLMDNTGKCHCVLIGDAV 60
+ IT+ ++ YLVDVIG+++ S E+ ++ + K++ I+L D++GKC C L G+ V
Sbjct: 124 ISQITSRTQDYEYLVDVIGLMTGISAEREFVRDGKLTKILVIELTDHSGKCECTLFGNYV 183
Query: 61 QTLSDYLCLNWVLRPVVGLRFVDVRRVEGKFTVQ-IIPYVSRIYINQVF-EHLMFNDGVS 118
L + PV+ ++F V+ GK ++Q ++ +RIY+N F E L F +G
Sbjct: 184 DELHKLMSKAVEGSPVIVIQFAKVKIFRGKASIQNVVGSTTRIYLNPSFPEALKFKEGKE 243
Query: 119 V 119
V
Sbjct: 244 V 244
>Medtr4g036240.3 | replication factor-A carboxy-terminal domain
protein | HC | chr4:11830210-11833873 | 20130731
Length = 417
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 107/292 (36%), Gaps = 52/292 (17%)
Query: 20 ILSAASKEKLLIKGNHVYKMMEIDLMDNTGKCHCVLIGDAVQTLSDYLCLNWVLRPVVGL 79
+L+ E+ + K+ I + + K C L G V L+ +L VV +
Sbjct: 1 MLTGVGTEREYERNGSATKLNVIAMEADGYKLQCTLFGTYVDELNTFLATGETANVVVSI 60
Query: 80 RFVDVRRVEGKFTVQIIPYVSRIYINQV-------------------------------- 107
+ V+ + +Q +R+ N V
Sbjct: 61 QLAKVKVFQDNIHIQNCLNCTRLKFNPVCVEGTAFKNRMIENDDTPSPLTQLAVEPSIDP 120
Query: 108 FEHLMFN--------------DGVSVVSGLVISFIKDSPWWYVSCRCHTEVIPEDDVYKC 153
+ +FN +G+ VV G V + W+Y +C C+ V P + ++ C
Sbjct: 121 LQDFLFNTPRTTIQGLKDSQQEGMYVVLGTVKQIVNPENWYYTACMCNKSVYPAEGMHFC 180
Query: 154 HRCYRNIAKTIRRYRIRLELFDGTDIAMFVLNDAVVSELVGLPCEKLL--NFIEDPLVPQ 211
+C R++ K RY I++ + D +D A FVL D + L C +L + ++ ++P
Sbjct: 181 EKCNRHVVKVFPRYSIKVRVVDDSDCATFVLFDRDATMLFNKSCADILETHRADEGVLP- 239
Query: 212 YPTXXXXXXXXXXXXXXVRIGGQMSYNGERIYEVLRLCSDADVIAMFNSGIA 263
V +S E+ + V ++C+D +I F + A
Sbjct: 240 ---TEIAALVNCTYLFKVEFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWA 288
>Medtr6g051890.1 | replication factor-A carboxy-terminal domain
protein | HC | chr6:18071124-18068908 | 20130731
Length = 399
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 114 NDGVSVVSGLVISFIKDSPWWYVSCRCHTEVIPEDDVYKCHRCYRNIAKTIRRYRIRLEL 173
DG+ VVSG+V ++D W+Y +C CH ++P+ Y C C ++ + R ++ + +
Sbjct: 200 KDGLFVVSGIVDGLVEDEEWYYPACTCHRSLMPDYGAYYCKDCAEHVFHMVPRCKVNIHV 259
Query: 174 FDGTDIAMFVLND 186
DGTD A+FVL D
Sbjct: 260 TDGTDEAVFVLFD 272
>Medtr2g008650.1 | replication factor-A carboxy-terminal domain
protein | LC | chr2:1569207-1566568 | 20130731
Length = 555
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 117 VSVVSGLVISFIKDSPWWYVSCRCHTEVIPEDDVYKCHRCYRNIAKTIRRYRIRLELFDG 176
V VV G + + +WY +C C VIP+ ++ C +C R++ K RY +R+ D
Sbjct: 291 VYVVLGTIKRIVNRENFWYTACICSKAVIPDSQMFYCEKCDRHVKKVFSRYCLRVRAIDH 350
Query: 177 TDIAMFVLNDAVVSELVGLPCEKLL 201
TD A V+ D + L C +L
Sbjct: 351 TDCATLVIFDKEATALFNKSCVDML 375
>Medtr8g479260.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:33777150-33779789 | 20130731
Length = 555
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 117 VSVVSGLVISFIKDSPWWYVSCRCHTEVIPEDDVYKCHRCYRNIAKTIRRYRIRLELFDG 176
V VV G + + +WY +C C VIP+ ++ C +C R++ K RY +R+ D
Sbjct: 291 VYVVLGTIKRIVNRENFWYTACICSKAVIPDSQMFYCEKCDRHVKKVFSRYCLRVRAIDH 350
Query: 177 TDIAMFVLNDAVVSELVGLPCEKLL 201
TD A V+ D + L C +L
Sbjct: 351 TDCATLVIFDKEATALFNKSCVDML 375
>Medtr2g048550.1 | replication factor-A carboxy-terminal domain
protein | LC | chr2:21410361-21406613 | 20130731
Length = 495
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 93/236 (39%), Gaps = 49/236 (20%)
Query: 14 LVDVIGILSAASKEKLLIKGNHVYKMMEIDLMDNTGKCHCVLIGDAVQTLSDYLCLNWVL 73
L DVIG+L+ +K+ +G K+ I++ C L G V L++++ +
Sbjct: 138 LGDVIGMLTDVRVKKIDAEGAACDKLAIIEMNHEGCFIQCSLFGTFVDQLNNFVAKGDIS 197
Query: 74 RPVVGLRFVDVRRV-EGKFTVQIIPYVSRIYINQVFE----------------------- 109
+V + F V V GK + + S++ N +F
Sbjct: 198 NVIVAVLFAKVEYVIAGKLVISTVT-GSKLVFNPLFTTAIDLKGSMMYKRPLTTPSIRIM 256
Query: 110 -------HLMFNDGVS-----------------VVSGLVISFIKDSPWWYVSCRCHTEVI 145
H+ + G+S +V G + + D WWYV C C V
Sbjct: 257 DDVDRYVHMYDHWGLSPKATISGLSFCEVGRTYIVYGNISELLLDDGWWYVGCVCKKRVF 316
Query: 146 PEDDVYKCHRCYRNIAKTIRRYRIRLELFDGTDIAMFVLNDAVVSELVGLPCEKLL 201
P+ ++ C +C +++ RY+++ +FD T A F++ D + + C +L+
Sbjct: 317 PDGGMFFCAKCSKHVFNVKPRYKVKFNVFDHTGEANFIVFDKALEMFLQRTCAELV 372
>Medtr6g445520.1 | replication factor-A carboxy-terminal domain
protein | HC | chr6:15886770-15884303 | 20130731
Length = 428
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 119 VVSGLVISFIKDSPWWYVSCRCHTEVIPEDDVYKCHRCYRNIAKTIRRYRIRLELFDGTD 178
VV V I WWY +C C+ +V+P++ ++ C +C +++ RY I++ + D TD
Sbjct: 156 VVKATVKFVIDTDEWWYTACVCNKKVVPDEKMFFCAKCNKHVIHVCPRYMIKVRVIDETD 215
Query: 179 IAMFVLND 186
A FV+ D
Sbjct: 216 SATFVIFD 223
>Medtr4g134870.1 | AP2 domain class transcription factor | LC |
chr4:56537430-56539491 | 20130731
Length = 425
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 115 DGVSVVSGLVISFIKDSPWWYVSCRCHTEVIPEDDVYKCHRCYRNIAKTIRRYRIRLELF 174
+GV VV G V ++ + WWY + RC+ V+ Y C+ C +R ++++++
Sbjct: 162 EGVFVVGGKVEGLVEGAEWWYSAYRCNRSVLAASGSYYCNGC-------VRHCKVKVKVS 214
Query: 175 DGTDIAMFVLNDAVVSELVGLPCEKLLNFIEDPLVPQYPT 214
DG + VL D VS +V C KL+ ++ YP+
Sbjct: 215 DGECKVILVLFDNDVSFIVKKSCAKLVADVKGENADFYPS 254
>Medtr3g081610.1 | transmembrane protein, putative | LC |
chr3:36944252-36945254 | 20130731
Length = 221
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 28/162 (17%)
Query: 123 LVISFIKDSPWWYVSCRCHTEVIPEDDVYKCHRCYRNIAKTIRRYRIRLELFDGTDIAMF 182
+V + I WWY +C+CH V P+ Y C C +++ + R
Sbjct: 58 IVCATIDGEDWWYPACKCHRSVTPDSGAYYCKDCVKHVFHMVPR---------------- 101
Query: 183 VLNDAVVSELVGLPCEKLLNFIEDPLVPQYPTXXXXXXXXXXXXXXVRIGGQMSYNGERI 242
L+ +PC L++ + YPT R +S+ +
Sbjct: 102 ---------LICIPCSTLVSVSKAENAGFYPTHFNKLKGRKMLFKVERCTS-VSFMSDGS 151
Query: 243 YEVLRLCSDADVIAMFNSGIAII--TPSKDKFIPPFTELEGV 282
+ V R+C +A V+ FN + TP KD P ++ GV
Sbjct: 152 FRVKRVCEEASVLEQFNPVDVEVESTPFKDPSKSPISDTRGV 193