Miyakogusa Predicted Gene

Lj4g3v1107610.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1107610.1 Non Characterized Hit- tr|B9RV23|B9RV23_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,32,7e-16,zf-CCCH,Zinc finger, CCCH-type; no description,NULL; ZINC
FINGER (CCCH-TYPE) FAMILY PROTEIN,NULL; CC,CUFF.48463.1
         (382 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g066730.1 | zinc finger CCCH domain protein | HC | chr8:27...   470   e-133
Medtr8g066730.2 | zinc finger CCCH domain protein | HC | chr8:27...   315   4e-86
Medtr4g113940.1 | zinc finger CCCH domain protein | LC | chr4:46...   120   3e-27
Medtr4g113970.1 | zinc finger CCCH domain protein | HC | chr4:46...   105   6e-23
Medtr4g113860.1 | zinc finger CCCH domain protein | LC | chr4:46...   104   2e-22
Medtr3g050390.1 | zinc finger CCCH domain protein | LC | chr3:19...    92   1e-18
Medtr4g113890.1 | zinc finger C-x8-C-x5-C-x3-H type family prote...    80   3e-15
Medtr1g109320.1 | zinc finger CCCH domain protein | HC | chr1:49...    50   4e-06
Medtr1g053960.1 | zinc finger C-x8-C-x5-C-x3-H type family prote...    49   8e-06

>Medtr8g066730.1 | zinc finger CCCH domain protein | HC |
           chr8:27741156-27744224 | 20130731
          Length = 376

 Score =  470 bits (1210), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 247/388 (63%), Positives = 265/388 (68%), Gaps = 18/388 (4%)

Query: 1   MDYGRDGNVVQIITTXXXXXXXXXXXXXDSWPGDQADWATEDEYRYWNGNE---DTAPSN 57
           MDY RDGNVVQIITT             DSW  DQADWATEDEYRYWNGN+   +T PS+
Sbjct: 1   MDYNRDGNVVQIITTGGGGAA-------DSWSTDQADWATEDEYRYWNGNDAGGETTPSS 53

Query: 58  GDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGKMFFKTKLCCKFRAGTCPYVTN 117
                                               IGKMFFKTKLCCKFR GTCPY+TN
Sbjct: 54  N--SRAGSEPPSKKSRSNSQDGGGGGSGGGSNRAKAIGKMFFKTKLCCKFRVGTCPYITN 111

Query: 118 CNFAHSIEELRRPPPNWQEIVAAHEEEKAVLMSEPREEFQIPTIGS--YAGD-VSQRSYK 174
           CNFAHS+EELRRPP NWQEIVAAHEEE++V+  +PREEFQIPT+GS  + G+ ++ RSYK
Sbjct: 112 CNFAHSVEELRRPPENWQEIVAAHEEERSVI-EQPREEFQIPTVGSSTFVGESMNNRSYK 170

Query: 175 GRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLXXXXXXXXXXXXXXXXXXXXXXX 234
           GRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISL                       
Sbjct: 171 GRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGGGGSVGSGV 230

Query: 235 XXXXXXXXXXXXXXXXXXXXXXXKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRY 294
                                  KPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRY
Sbjct: 231 GSGSGVVVVAAGAAAVGNGPNL-KPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRY 289

Query: 295 GGGLMEGESRDTASAIAADTKQGVPSKTLADNVVASATPIAHSDIYHIGVPSQRPSIVLQ 354
           GGGLMEGESRD  S +A+DTKQGVPSKT ADNVVAS  PI  SD+YH+GVPSQRPSIV Q
Sbjct: 290 GGGLMEGESRDGVSVVASDTKQGVPSKTHADNVVASNPPIG-SDVYHLGVPSQRPSIVSQ 348

Query: 355 RPGQRTLQKWKGPDKISRIYGDWIDDIE 382
           RPGQR  QKWKGPDKISRIYGDWIDD E
Sbjct: 349 RPGQRAHQKWKGPDKISRIYGDWIDDFE 376


>Medtr8g066730.2 | zinc finger CCCH domain protein | HC |
           chr8:27741142-27744218 | 20130731
          Length = 290

 Score =  315 bits (807), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 171/300 (57%), Positives = 186/300 (62%), Gaps = 17/300 (5%)

Query: 1   MDYGRDGNVVQIITTXXXXXXXXXXXXXDSWPGDQADWATEDEYRYWNGNE---DTAPSN 57
           MDY RDGNVVQIITT             DSW  DQADWATEDEYRYWNGN+   +T PS+
Sbjct: 1   MDYNRDGNVVQIITTGGGGAA-------DSWSTDQADWATEDEYRYWNGNDAGGETTPSS 53

Query: 58  GDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGKMFFKTKLCCKFRAGTCPYVTN 117
                                               IGKMFFKTKLCCKFR GTCPY+TN
Sbjct: 54  NSRAGSEPPSKKSRSNSQDGGGGGSGGGSNRAKA--IGKMFFKTKLCCKFRVGTCPYITN 111

Query: 118 CNFAHSIEELRRPPPNWQEIVAAHEEEKAVLMSEPREEFQIPTIGS--YAGD-VSQRSYK 174
           CNFAHS+EELRRPP NWQEIVAAHEEE++V+  +PREEFQIPT+GS  + G+ ++ RSYK
Sbjct: 112 CNFAHSVEELRRPPENWQEIVAAHEEERSVI-EQPREEFQIPTVGSSTFVGESMNNRSYK 170

Query: 175 GRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLXXXXXXXXXXXXXXXXXXXXXXX 234
           GRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISL                       
Sbjct: 171 GRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISL-GPGGYGGGGGGGGGGGGSVGSG 229

Query: 235 XXXXXXXXXXXXXXXXXXXXXXXKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRY 294
                                  KPSNWKTRICNKWEMTGYCPFGNKCHFAHGAT   R+
Sbjct: 230 VGSGSGVVVVAAGAAAVGNGPNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATAKLRW 289


>Medtr4g113940.1 | zinc finger CCCH domain protein | LC |
           chr4:46890061-46892284 | 20130731
          Length = 270

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 124/291 (42%), Gaps = 81/291 (27%)

Query: 97  MFFKTKLCCKFRAGTCPYVTNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVLMSEPREEF 156
           +F+KT++C KFR GTC    NCNFAH  EELR+PPP+WQ++V    E +  L +  +++ 
Sbjct: 54  IFYKTRICTKFRFGTCRNGQNCNFAHGAEELRQPPPHWQKLVGLRSEGRMQLGNHAKDKK 113

Query: 157 QIPTIGSYAGDVSQRSYKGRHCKKFYTEEGCPYGDSCTFLH-------DEQSKNRESVAI 209
            I T+              + CK +   E CPYGD+C FLH       D+  K RE  AI
Sbjct: 114 IIQTM--------------KLCKNYCNGEECPYGDNCIFLHEDPAQFRDDSLKLRECSAI 159

Query: 210 SLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSNWKTRICNK 269
           ++                                              + +  KT++C  
Sbjct: 160 TI-------------------------------ETNNLEGSRALNKQARSTYRKTKLCRN 188

Query: 270 WEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDTASAIAADTKQGVPSKTLADNVVA 329
           W+ TGYC FG  C FAHG  EL   GG            AI A+    + + T A    +
Sbjct: 189 WKHTGYCSFGMNCLFAHGEEELQVPGG------------AIQAEAAVTIENSTNA--ATS 234

Query: 330 SATPIAHSDIYHIGVPSQRPSIVLQRPGQRTLQKWKGPDKISRIYGDWIDD 380
            A+ +   +  H+     R   +L   G +  Q       I+RIYGDWIDD
Sbjct: 235 PASLLVEKEEEHV-----RKKRIL---GLKFSQ-------INRIYGDWIDD 270


>Medtr4g113970.1 | zinc finger CCCH domain protein | HC |
           chr4:46898290-46899312 | 20130731
          Length = 255

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 94/199 (47%), Gaps = 38/199 (19%)

Query: 97  MFFKTKLCCKFRAGTCPYVTNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVLMSEPREEF 156
           +FFKT++C KFR GTC    NCN+AH  +E+R+PP NWQE+V    EE+  +     E  
Sbjct: 77  IFFKTRICTKFRFGTCRNGENCNYAHGADEIRQPPRNWQELVDPRNEERHQV-----ETR 131

Query: 157 QIPTIGSYAGDVSQR-SYKGRHCKKFYTEEGCPYGDSCTFLHDEQS-------KNRESVA 208
           Q P       D  Q+  +K + CKK+Y  E CPYGD C+FLH++ +       K RE  A
Sbjct: 132 QQPP----NWDEDQKIIHKMKLCKKYYIGEECPYGDKCSFLHEDPARFRDASWKTRECSA 187

Query: 209 ISLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSNWKTRICN 268
           IS+                                              + + WKT++C 
Sbjct: 188 ISV--------------------GNIGSPKSFGYGSNNLEGIRAVNKPARSAYWKTKLC- 226

Query: 269 KWEMTGYCPFGNKCHFAHG 287
           +W+ TG CPFG  C FAHG
Sbjct: 227 QWQHTGSCPFGETCDFAHG 245


>Medtr4g113860.1 | zinc finger CCCH domain protein | LC |
           chr4:46863432-46865699 | 20130731
          Length = 321

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 126/295 (42%), Gaps = 80/295 (27%)

Query: 97  MFFKTKLCCKFRAGTCPYVTNCNFAHSIEELRRPPPNWQEIVA-AHEEEKAVLMSEPREE 155
           +F+KT++C KFR GTC    +CNFAH +EELR+PP NW E+V+  ++E+K +   E  ++
Sbjct: 82  IFYKTRICTKFRFGTCRNGKDCNFAHGVEELRQPPGNWLELVSPCNDEQKQLRNWEEDQK 141

Query: 156 FQIPTIGSYAGDVSQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR-------ESVA 208
           F                +K + C+ +   E C +G  C F H++ +K+R       E  +
Sbjct: 142 F---------------IHKMKLCRMYSNGEKCFFGSKCNFRHEDPAKSRDHSWKSGECSS 186

Query: 209 ISLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSNWKTRICN 268
           IS+                                              + + WK  +C 
Sbjct: 187 ISI--------------------------GTIGSSKSFGDGIRAVNKPARGTYWKNNMCF 220

Query: 269 KWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDTASAIAADTKQGVPSKTLADNVV 328
           +W+  G CPFG  CHF+HG                   A AIA  TK   P+   A  + 
Sbjct: 221 RWQHQGSCPFGEDCHFSHGE------------------AVAIANSTKAINPTSRKA--LT 260

Query: 329 ASATPIAHSDIYHIGVPSQRPSIVLQRPGQRTLQK---WKGPDKISRIYGDWIDD 380
            S      +D Y    P+  P+ ++ +  ++  +    W   +KI+R+YGDWIDD
Sbjct: 261 GSG-----NDAY---APTTFPARLVAKEEEQAKKMHLLWLKLNKINRVYGDWIDD 307


>Medtr3g050390.1 | zinc finger CCCH domain protein | LC |
           chr3:19845557-19847314 | 20130731
          Length = 242

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 110/289 (38%), Gaps = 94/289 (32%)

Query: 95  GKMFFKTKLCCKFRAGTCPYVTNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVLMSEPRE 154
           G +FFKT++C KF+ G CP   +C +AH + E+R+PP NW+++     EE    +     
Sbjct: 31  GSIFFKTRICHKFKFGNCPKGEHCTYAHGVGEIRQPPANWKDLAGPRNEEWMQFLD---- 86

Query: 155 EFQIPTIGSYAGDVSQRSYKGRHCKKFYTEEGCPYGDSCTFLH---DEQSKNRESVAISL 211
                       D  +  +K   CKK+Y  E CPYGD+C FLH   ++  K+RE+ A+S+
Sbjct: 87  ------------DDEKIIHKMGLCKKYYNGEECPYGDTCIFLHRLREDSWKSREACALSI 134

Query: 212 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSNWKTRICNKWE 271
                                                         + + WK ++     
Sbjct: 135 --------------------------GSIGDGSNNLEGNRSVNKPARGTYWKIKL----- 163

Query: 272 MTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDTASAIAADTKQGVPSKTLADNVVASA 331
               CP G+ CH+A+G                 D     A D    +P+           
Sbjct: 164 ----CPIGDDCHYAYGEA---------------DVLPVSANDATTSIPAS---------- 194

Query: 332 TPIAHSDIYHIGVPSQRPSIVLQRPGQRTLQKWKGPDKISRIYGDWIDD 380
                     +G+  +     +++  ++ L  WK   KI+ IY DWIDD
Sbjct: 195 ----------LGIAKE-----VEQAKKKPLLWWKLNTKINTIYADWIDD 228


>Medtr4g113890.1 | zinc finger C-x8-C-x5-C-x3-H type family protein
           | HC | chr4:46872745-46874462 | 20130731
          Length = 231

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 24/108 (22%)

Query: 97  MFFKTKLCCKFRAGTCPYVTNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVLMSEPREEF 156
           +F+KT++C KF  G C   TNCNFAH  EE+R+PPPN Q++V    E+K ++        
Sbjct: 62  IFYKTRICTKFIFGACRNGTNCNFAHGAEEIRQPPPNSQKLVGPCNEDKKIIN------- 114

Query: 157 QIPTIGSYAGDVSQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR 204
                            K + CKK+   E CPYGD C FLH++ ++ R
Sbjct: 115 -----------------KMKLCKKYCNGEKCPYGDKCKFLHEDPAQFR 145



 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 24/34 (70%)

Query: 263 KTRICNKWEMTGYCPFGNKCHFAHGATELHRYGG 296
           KT++C KW+ TGYC FG  CHFAHG  EL   GG
Sbjct: 150 KTKLCLKWKDTGYCSFGKNCHFAHGEEELQVPGG 183


>Medtr1g109320.1 | zinc finger CCCH domain protein | HC |
           chr1:49436307-49432456 | 20130731
          Length = 357

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 262 WKTRICNKWEMTGYCPFGNKCHFAHGATEL 291
           +KT +CNKW+ TG CP+G+ C FAHG  EL
Sbjct: 274 FKTELCNKWQETGTCPYGDHCQFAHGIGEL 303


>Medtr1g053960.1 | zinc finger C-x8-C-x5-C-x3-H type family protein
           | HC | chr1:22947319-22950793 | 20130731
          Length = 293

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 12/101 (11%)

Query: 100 KTKLCCKFRA-GTCPYVTNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVLMSEPREEFQI 158
           KTK C KF +   CP+   C+F+H +       P     VA     K    + PR     
Sbjct: 32  KTKPCTKFFSIAGCPFGEGCHFSHHV-------PGGYNAVAQMMNLKPA--APPRNVAAP 82

Query: 159 PTIGSYAGDVSQRSYKGRHCKKFYTEEGCPYGDSCTFLHDE 199
           P + +     +Q + K R C KF + EGC +GD C F H E
Sbjct: 83  PPVSNNGS--AQHAVKSRICNKFNSLEGCKFGDKCHFAHGE 121