Miyakogusa Predicted Gene
- Lj4g3v1083800.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1083800.1 Non Characterized Hit- tr|I1JC59|I1JC59_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,95,0,CLATHRIN COAT
ASSEMBLY PROTEIN AP-1,NULL; CLATHRIN COAT ASSEMBLY PROTEIN,NULL;
CLAT_ADAPTOR_M_2,Clat,CUFF.48373.1
(220 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g033500.1 | clathrin assembly protein AP47, putative | HC ... 439 e-124
Medtr8g069565.1 | clathrin assembly protein AP47, putative | HC ... 432 e-121
Medtr5g033500.2 | clathrin assembly protein AP47, putative | HC ... 202 1e-52
Medtr5g014330.1 | clathrin-adaptor medium chain AP-2 | HC | chr5... 199 2e-51
Medtr5g014330.2 | clathrin-adaptor medium chain AP-2 | HC | chr5... 145 3e-35
Medtr5g066050.2 | clathrin-adaptor medium chain AP-2 | HC | chr5... 133 1e-31
Medtr5g066050.1 | clathrin-adaptor medium chain AP-2 | HC | chr5... 133 1e-31
Medtr3g112190.1 | AP-4 complex subunit mu-1 | HC | chr3:52543098... 127 8e-30
Medtr7g111870.3 | clathrin adaptor complexes medium subunit fami... 77 2e-14
Medtr7g111870.1 | clathrin adaptor complexes medium subunit fami... 77 2e-14
Medtr7g111870.2 | clathrin adaptor complexes medium subunit fami... 64 1e-10
>Medtr5g033500.1 | clathrin assembly protein AP47, putative | HC |
chr5:14425505-14431918 | 20130731
Length = 428
Score = 439 bits (1129), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/220 (95%), Positives = 214/220 (97%)
Query: 1 MPECKLGLNDRVLLEAQGRTAKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLM 60
MPECKLGLNDRVLLEAQGRT KGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLM
Sbjct: 209 MPECKLGLNDRVLLEAQGRTTKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLM 268
Query: 61 TYRLNTQVKPLFWVEAQVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDSTNPTV 120
TYRL+TQVKPL WVEA VEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVD+TNP V
Sbjct: 269 TYRLSTQVKPLIWVEANVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDATNPNV 328
Query: 121 RTSMGSASYAPEKDALVWKIRSFPGGKEYMLRAEFLLPSITDEDATPERKAPIRVKFEIP 180
RTSMGSASYAPEKDAL+WKIRSFPGGKEYMLRAEF LPSITDE+A PERKAPIRVKFEIP
Sbjct: 329 RTSMGSASYAPEKDALIWKIRSFPGGKEYMLRAEFRLPSITDEEAAPERKAPIRVKFEIP 388
Query: 181 YFTVSGIQVRYLKIIEKSGYQSLPWVRYITMAGEYELRLI 220
YFTVSGIQVRYLKIIEKSGYQ+LPWVRYITMAGEYELRLI
Sbjct: 389 YFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 428
>Medtr8g069565.1 | clathrin assembly protein AP47, putative | HC |
chr8:29197875-29203803 | 20130731
Length = 428
Score = 432 bits (1112), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/220 (92%), Positives = 212/220 (96%)
Query: 1 MPECKLGLNDRVLLEAQGRTAKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLM 60
MPECKLGLNDR+LLEAQGR KGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLM
Sbjct: 209 MPECKLGLNDRILLEAQGRATKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLM 268
Query: 61 TYRLNTQVKPLFWVEAQVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDSTNPTV 120
TYRL+TQVKPLFWVEAQVEKHSKSRIEI VKARSQFKERSTATNVEIELPVP D+T P V
Sbjct: 269 TYRLSTQVKPLFWVEAQVEKHSKSRIEITVKARSQFKERSTATNVEIELPVPADATTPNV 328
Query: 121 RTSMGSASYAPEKDALVWKIRSFPGGKEYMLRAEFLLPSITDEDATPERKAPIRVKFEIP 180
RTSMGSA+YAPEKDAL+WKIRSFPGGKEYMLRAEF LPSITDE+A PERKAPIR+KFEIP
Sbjct: 329 RTSMGSAAYAPEKDALIWKIRSFPGGKEYMLRAEFRLPSITDEEAAPERKAPIRLKFEIP 388
Query: 181 YFTVSGIQVRYLKIIEKSGYQSLPWVRYITMAGEYELRLI 220
YFTVSGIQVRYLKIIEKSGYQ+LPWVRYITMAGEYELRLI
Sbjct: 389 YFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 428
>Medtr5g033500.2 | clathrin assembly protein AP47, putative | HC |
chr5:14425505-14431872 | 20130731
Length = 362
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 95/99 (95%), Positives = 96/99 (96%)
Query: 1 MPECKLGLNDRVLLEAQGRTAKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLM 60
MPECKLGLNDRVLLEAQGRT KGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLM
Sbjct: 209 MPECKLGLNDRVLLEAQGRTTKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLM 268
Query: 61 TYRLNTQVKPLFWVEAQVEKHSKSRIEIMVKARSQFKER 99
TYRL+TQVKPL WVEA VEKHSKSRIEIMVKARSQFKER
Sbjct: 269 TYRLSTQVKPLIWVEANVEKHSKSRIEIMVKARSQFKER 307
>Medtr5g014330.1 | clathrin-adaptor medium chain AP-2 | HC |
chr5:4799531-4790979 | 20130731
Length = 438
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 142/223 (63%), Gaps = 6/223 (2%)
Query: 1 MPECKLGLNDRVLLEAQGR-----TAKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDG 55
MP+ KLGLND++ LE + + T GK I+L+D+ FHQCV L RF +++T+SF+PPDG
Sbjct: 216 MPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDG 275
Query: 56 SFDLMTYRLNTQVKPLFWVEAQVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDS 115
F+LM YR+ V F V +++ ++R+E+ VK +S F + A V +++PVP +
Sbjct: 276 EFELMKYRITEGVNLPFKVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVVKIPVPKQT 335
Query: 116 TNPTVRTSMGSASYAPEKDALVWKIRSFPGGKEYMLRAEFLLPSITDEDATPERKAPIRV 175
+ + G A Y D LVWKIR FPG E L AE L S E + R PI++
Sbjct: 336 AKTSFTVTSGRAKYNAAIDCLVWKIRKFPGQTEPTLSAEIELISTMTEKKSWTR-PPIQM 394
Query: 176 KFEIPYFTVSGIQVRYLKIIEKSGYQSLPWVRYITMAGEYELR 218
+F++P FT SG++VR+LK+ EKSGY ++ WVRYIT AG YE+R
Sbjct: 395 EFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIR 437
>Medtr5g014330.2 | clathrin-adaptor medium chain AP-2 | HC |
chr5:4799487-4791529 | 20130731
Length = 407
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 111/186 (59%), Gaps = 6/186 (3%)
Query: 1 MPECKLGLNDRVLLEAQGR-----TAKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDG 55
MP+ KLGLND++ LE + + T GK I+L+D+ FHQCV L RF +++T+SF+PPDG
Sbjct: 216 MPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDG 275
Query: 56 SFDLMTYRLNTQVKPLFWVEAQVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDS 115
F+LM YR+ V F V +++ ++R+E+ VK +S F + A V +++PVP +
Sbjct: 276 EFELMKYRITEGVNLPFKVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVVKIPVPKQT 335
Query: 116 TNPTVRTSMGSASYAPEKDALVWKIRSFPGGKEYMLRAEFLLPSITDEDATPERKAPIRV 175
+ + G A Y D LVWKIR FPG E L AE L S E + R PI++
Sbjct: 336 AKTSFTVTSGRAKYNAAIDCLVWKIRKFPGQTEPTLSAEIELISTMTEKKSWTR-PPIQM 394
Query: 176 KFEIPY 181
+F++ Y
Sbjct: 395 EFQVCY 400
>Medtr5g066050.2 | clathrin-adaptor medium chain AP-2 | HC |
chr5:27832038-27823989 | 20130731
Length = 450
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 19/233 (8%)
Query: 2 PECKLGLNDRVLLEAQGRT----------AKGKAIDLEDIKFHQCVRLARFENDRTISFI 51
PE +L LND + + GR+ + A+ L+D FH+ VRL FE +RT+S I
Sbjct: 222 PEIRLALNDDLSI---GRSEGPISGYRSSSGSGAVVLDDCNFHESVRLDSFETNRTLSLI 278
Query: 52 PPDGSFDLMTYRLNTQVKPLFWVEAQVEKHSKSRIEIMVKARSQFKERSTATNVEIELPV 111
PPDG F +M YR+ KP F + A +E+ + E+ +K ++F TA +++++P+
Sbjct: 279 PPDGEFPVMNYRMTQPFKPPFRINALIEEAGSLKAEVFLKLSAEFASSITANTIKVQMPL 338
Query: 112 PVDSTNPTVRTSMGSAS----YAPEKDALVWKIRSFPGGKEYMLRAEFLLPSITDEDATP 167
P +T + G+ + L W ++ GG E+ LRA+ + + T
Sbjct: 339 PKYTTRVSFELEPGATGQTTDFREANKKLEWSLKKINGGSEHTLRAKLTFSQESHGNITK 398
Query: 168 ERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSG-YQSLPWVRYITMAGEYELRL 219
E P+ + F IP VS +QV+YL+I +KSG ++ WVRY+T A Y R+
Sbjct: 399 E-SGPVSMTFTIPMHNVSQLQVKYLQIGKKSGSHEPYRWVRYVTQANSYVARI 450
>Medtr5g066050.1 | clathrin-adaptor medium chain AP-2 | HC |
chr5:27832038-27823989 | 20130731
Length = 451
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 19/233 (8%)
Query: 2 PECKLGLNDRVLLEAQGRT----------AKGKAIDLEDIKFHQCVRLARFENDRTISFI 51
PE +L LND + + GR+ + A+ L+D FH+ VRL FE +RT+S I
Sbjct: 223 PEIRLALNDDLSI---GRSEGPISGYRSSSGSGAVVLDDCNFHESVRLDSFETNRTLSLI 279
Query: 52 PPDGSFDLMTYRLNTQVKPLFWVEAQVEKHSKSRIEIMVKARSQFKERSTATNVEIELPV 111
PPDG F +M YR+ KP F + A +E+ + E+ +K ++F TA +++++P+
Sbjct: 280 PPDGEFPVMNYRMTQPFKPPFRINALIEEAGSLKAEVFLKLSAEFASSITANTIKVQMPL 339
Query: 112 PVDSTNPTVRTSMGSAS----YAPEKDALVWKIRSFPGGKEYMLRAEFLLPSITDEDATP 167
P +T + G+ + L W ++ GG E+ LRA+ + + T
Sbjct: 340 PKYTTRVSFELEPGATGQTTDFREANKKLEWSLKKINGGSEHTLRAKLTFSQESHGNITK 399
Query: 168 ERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSG-YQSLPWVRYITMAGEYELRL 219
E P+ + F IP VS +QV+YL+I +KSG ++ WVRY+T A Y R+
Sbjct: 400 E-SGPVSMTFTIPMHNVSQLQVKYLQIGKKSGSHEPYRWVRYVTQANSYVARI 451
>Medtr3g112190.1 | AP-4 complex subunit mu-1 | HC |
chr3:52543098-52538217 | 20130731
Length = 442
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 114/223 (51%), Gaps = 7/223 (3%)
Query: 2 PECKLGLNDRVLLEAQGRTAKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMT 61
PE +L LN+ + + G A+ L+D FH+ V L F+ DRT+S +PPDG F +M
Sbjct: 222 PEIRLALNEDLSIGTSDYRGSG-AVILDDCNFHESVHLDSFDIDRTLSLVPPDGEFPVMN 280
Query: 62 YRLNTQVKPLFWVEAQVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDSTNPTVR 121
YR+ KP F + A +E+ + E+ +K R++F A V + +P+P +
Sbjct: 281 YRITQAFKPPFRINALIEETGPLKAEVTIKVRAEFNSSINANTVLVRMPLPAFTARVNFE 340
Query: 122 TSMGSASYAPE-KDA---LVWKIRSFPGGKEYMLRAEFLLPSITDEDATPERKAPIRVKF 177
G+ + + K+A L W ++ GG E+ LRA+ + E P+ + F
Sbjct: 341 LEPGAVGHTTDFKEANKKLEWGLKKVVGGSEHTLRAKLTFSQELHGNIMKE-AGPLSMTF 399
Query: 178 EIPYFTVSGIQVRYLKIIEKS-GYQSLPWVRYITMAGEYELRL 219
IP + S +QV+YL+I +KS + WVRY+T A Y RL
Sbjct: 400 TIPMYNSSRLQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL 442
>Medtr7g111870.3 | clathrin adaptor complexes medium subunit family
protein | HC | chr7:45960804-45965006 | 20130731
Length = 411
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 18/197 (9%)
Query: 28 LEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLFWVEAQVEKHSKS-RI 86
L+D++FH CVR +E+++ +SF+PPDG F LM YR+ +V+ Q+ + R+
Sbjct: 226 LDDVRFHPCVRFRPWESNQILSFVPPDGQFKLMNYRVRKLKSTPIYVKPQLTSDGGTCRL 285
Query: 87 EIMVKARSQFKERSTATNVEIELPVPVDSTNPTVRTSMGSASYAPEKDALVWKIRSFPGG 146
+MV R+ + + NV+ +LP + S + T ++ G+ + K W I P
Sbjct: 286 NVMVGMRNDPGKTVDSVNVQFQLPPCILSADLT--STHGTVNILSNK-TCTWSIGRIPKD 342
Query: 147 KEYMLRAEFLLPSITDEDATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQSLPW- 205
K + +L T + + F++ F + G+ + LK I+K +++P+
Sbjct: 343 KAPSMSGTLVL-------ETGMERLHVFPTFQVD-FRIMGVALSGLK-IDKLDLKTVPYR 393
Query: 206 ----VRYITMAGEYELR 218
R +T AGE+E+R
Sbjct: 394 FYKGFRALTRAGEFEVR 410
>Medtr7g111870.1 | clathrin adaptor complexes medium subunit family
protein | HC | chr7:45961216-45965010 | 20130731
Length = 411
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 18/197 (9%)
Query: 28 LEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLFWVEAQVEKHSKS-RI 86
L+D++FH CVR +E+++ +SF+PPDG F LM YR+ +V+ Q+ + R+
Sbjct: 226 LDDVRFHPCVRFRPWESNQILSFVPPDGQFKLMNYRVRKLKSTPIYVKPQLTSDGGTCRL 285
Query: 87 EIMVKARSQFKERSTATNVEIELPVPVDSTNPTVRTSMGSASYAPEKDALVWKIRSFPGG 146
+MV R+ + + NV+ +LP + S + T ++ G+ + K W I P
Sbjct: 286 NVMVGMRNDPGKTVDSVNVQFQLPPCILSADLT--STHGTVNILSNK-TCTWSIGRIPKD 342
Query: 147 KEYMLRAEFLLPSITDEDATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQSLPW- 205
K + +L T + + F++ F + G+ + LK I+K +++P+
Sbjct: 343 KAPSMSGTLVL-------ETGMERLHVFPTFQVD-FRIMGVALSGLK-IDKLDLKTVPYR 393
Query: 206 ----VRYITMAGEYELR 218
R +T AGE+E+R
Sbjct: 394 FYKGFRALTRAGEFEVR 410
>Medtr7g111870.2 | clathrin adaptor complexes medium subunit family
protein | HC | chr7:45961316-45965000 | 20130731
Length = 333
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 28 LEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLFWVEAQVEKHSKS-RI 86
L+D++FH CVR +E+++ +SF+PPDG F LM YR+ +V+ Q+ + R+
Sbjct: 226 LDDVRFHPCVRFRPWESNQILSFVPPDGQFKLMNYRVRKLKSTPIYVKPQLTSDGGTCRL 285
Query: 87 EIMVKARSQFKERSTATNVEIELP 110
+MV R+ + + NV+ +LP
Sbjct: 286 NVMVGMRNDPGKTVDSVNVQFQLP 309