Miyakogusa Predicted Gene

Lj4g3v1073530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1073530.1 Non Characterized Hit- tr|I1HXY1|I1HXY1_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,63.75,3e-19,RNA
PROCESSING PROTEIN LD23810P,NULL; coiled-coil,NULL;
seg,NULL,CUFF.48363.1
         (914 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g070490.1 | RNA recognition motif (RRM) containing protein...  1419   0.0  
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch...    56   2e-07
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch...    55   3e-07
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch...    55   4e-07
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch...    53   1e-06
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch...    52   3e-06
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro...    52   3e-06

>Medtr8g070490.1 | RNA recognition motif (RRM) containing protein |
           HC | chr8:29979285-29991364 | 20130731
          Length = 1031

 Score = 1419 bits (3673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 725/880 (82%), Positives = 760/880 (86%), Gaps = 2/880 (0%)

Query: 1   MSSFSITRKKTPFQKHXXXXXXXXXXXXXXXXXLYAEFVESFQGDITPGSKTFVRGGTIN 60
           MSSFSITRKKTPFQKH                 LYAEFVESFQGD  PGSKTFVRGGTIN
Sbjct: 1   MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTIN 60

Query: 61  PNEKLKDDSEGEKSKDGVSIPKKGSRYVPSFIPPPLATXXXXXXXXXXXXXXXXXXXXXX 120
           PN+KLKDDSEGEKSK+GVS PKKGSRYVPSFIPPPLAT                      
Sbjct: 61  PNDKLKDDSEGEKSKEGVSGPKKGSRYVPSFIPPPLATKGKESEKKKEEEKPKEKEKGKS 120

Query: 121 XNIDFFMEELKHEQEMREKRNQERENWRDGLPVEHSTTVSRFDELPDDFDPSGKLPGSFD 180
            NID FMEELK EQEMRE+RNQ+RE WRDG   EHS + SRFDELPDDFDPSGKLPGSFD
Sbjct: 121 RNIDHFMEELKQEQEMRERRNQDREQWRDGRIGEHSIS-SRFDELPDDFDPSGKLPGSFD 179

Query: 181 DGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 240
           DGDPQTTNLYVGNLSP+VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN
Sbjct: 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 239

Query: 241 RADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXXXXGHMAIRSKEGSTVILXXXX 300
           RADGQAAKDEMQGVVVYEYELKIGWGKSV            GHMAIRSKEG+TVIL    
Sbjct: 240 RADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGNTVILSGPS 299

Query: 301 XXXXXXXXXQNSELVLTPNVPDIMVTPPEDDHLRHLIDTMALYVLDGGCAFEQAIMERGR 360
                    QNSELVLTPNVPDIMVTPPED+HL+H+IDTMALYVLDGGCAFEQAIMERGR
Sbjct: 300 GPPVTSVPSQNSELVLTPNVPDIMVTPPEDEHLKHVIDTMALYVLDGGCAFEQAIMERGR 359

Query: 361 GNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPQLPPSRSP 420
           GNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPP LP ++SP
Sbjct: 360 GNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPIAKSP 419

Query: 421 DHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDRLRALTLERSQIKEAMGFALDNADAA 480
           +H+KESGSTHA GRSRR EPERTLTDAQRDEFED LRALTLERSQIK  MGF+LDNADAA
Sbjct: 420 EHDKESGSTHAAGRSRRAEPERTLTDAQRDEFEDMLRALTLERSQIKGVMGFSLDNADAA 479

Query: 481 GEIVEVLTESLTLRETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEAALPDIMESF 540
           GEIVEVLTESLTL+ETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEA LPD+MESF
Sbjct: 480 GEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDVMESF 539

Query: 541 NDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVVPFHSIC 600
           NDLYRS+MGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGV+PFHSIC
Sbjct: 540 NDLYRSVMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSIC 599

Query: 601 GDAPEIEQKITSEDTVVGGKINQDAALAMGRGAATQELMNLPLAELERRCRHNGLSLVGG 660
           GDAP+IEQKITS+D +VGGK +QDAALAMGRGAAT+ELM+LPLAELERRCRHNGLSLVGG
Sbjct: 600 GDAPDIEQKITSDDAIVGGKTDQDAALAMGRGAATKELMSLPLAELERRCRHNGLSLVGG 659

Query: 661 REIMVARLLSLEEAEKQRVYELDDELKYPHGQASSAKYSSGRRETSAELEPVGYSGWNHY 720
           RE+MVARLLSLEEAEKQR YELDD LKYP  Q SS K SSG+RETSA+ EP+G SG NHY
Sbjct: 660 REMMVARLLSLEEAEKQRGYELDDGLKYPGNQTSSGKNSSGQRETSADPEPMGLSGLNHY 719

Query: 721 GDDDLQSQGKESVPLAPTLPIPQPELKAFTKKEKNDPVLPASKWARXXXXXXXXQ-RSGK 779
           GD+DLQ QGK   PLAPTLPIPQPELKAF KKEKND VLPASKWAR        Q + GK
Sbjct: 720 GDEDLQLQGKGYAPLAPTLPIPQPELKAFAKKEKNDLVLPASKWAREDDESDDEQGKGGK 779

Query: 780 NLGLSYSSSGSENVGGGHIKADESESAADTSFSAHADSGLNEEQRQKLRRLEVALIEYRE 839
           NLGLSYSSSGSENVG   IKADESE+AAD+SF AHADSG+NEEQRQKLRRLEVALIEYRE
Sbjct: 780 NLGLSYSSSGSENVGDDLIKADESEAAADSSFPAHADSGMNEEQRQKLRRLEVALIEYRE 839

Query: 840 SLEERGIKNLEEIEKKVQTHRKRLQAEYGLSDSGEDGQGN 879
           SLEERGIKNLEEIEKKV  HRKRLQ EYGLSDS EDGQG+
Sbjct: 840 SLEERGIKNLEEIEKKVLMHRKRLQVEYGLSDSNEDGQGS 879


>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
           chr2:41853094-41847353 | 20130731
          Length = 428

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 12/97 (12%)

Query: 171 PSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQ 230
           P   +P  +D  +   T +YVGNL   V E  L + F +FG I SVK+            
Sbjct: 221 PVNTVPPEYDVNN---TTIYVGNLDLNVSEEELKQNFLQFGEIVSVKV---------HPG 268

Query: 231 RNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGK 267
           + CGFV F  RA  + A  +MQG ++ +  +++ WG+
Sbjct: 269 KACGFVQFGARASAEEAIQKMQGKILGQQVIRVSWGR 305


>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
           chr1:6171590-6176327 | 20130731
          Length = 425

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 172 SGKLPGSFDDG-------DPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTE 224
           SG  PG   +G       D   T ++VG L   V +  L +TF ++G IASVKI      
Sbjct: 273 SGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKI------ 326

Query: 225 EERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 268
                 + CGFV F NR + + A  ++ G ++ +  +++ WG++
Sbjct: 327 ---PVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRN 367


>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
           chr4:55111286-55115662 | 20130731
          Length = 411

 Score = 54.7 bits (130), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 177 GSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 236
           G+ ++ DP  T ++VGNL P V +  L + F ++G +  VKI            + CGFV
Sbjct: 264 GAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKI---------PSGKRCGFV 314

Query: 237 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 268
            F +R+  + A   + G ++    +++ WG+S
Sbjct: 315 QFADRSSAEEALRVLNGTLLGGQNVRLSWGRS 346


>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
           chr2:7987418-7992129 | 20130731
          Length = 401

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 13/100 (13%)

Query: 169 FDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERR 228
           ++PSG       + DP  T ++VGNL P V ++ L + F ++G +  VKI          
Sbjct: 247 YNPSGGQ----SENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKI---------P 293

Query: 229 RQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 268
             + CGFV F +R+  + A   + G ++    +++ WG++
Sbjct: 294 SGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRT 333


>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
           chr3:46662442-46658399 | 20130731
          Length = 420

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 181 DGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 240
           D D   T ++VG L P      L + F ++G I SVKI            + CGFV F N
Sbjct: 286 DTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKI---------PVGKGCGFVQFAN 336

Query: 241 RADGQAAKDEMQGVVVYEYELKIGWGKS 268
           R + + A  ++ G  V +  +++ WG++
Sbjct: 337 RNNAEEALQKLNGTTVGKQTVRLSWGRN 364


>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
           protein | HC | chr5:19719748-19722666 | 20130731
          Length = 170

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 185 QTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 244
           Q   LYVG L+ +V+E+ L   F  FG I  VK      ++  ++ R+ GFV F+ R D 
Sbjct: 8   QKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKT---PLDQATQKHRSFGFVTFLEREDA 64

Query: 245 QAAKDEMQGVVVYEYELKIGWG 266
            AA D M G  +Y   L + + 
Sbjct: 65  SAAMDNMDGAELYGRVLTVNYA 86