Miyakogusa Predicted Gene

Lj4g3v1073400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1073400.1 Non Characterized Hit- tr|D8UBN9|D8UBN9_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,41.55,3e-19,seg,NULL; PH domain-like,NULL,CUFF.48359.1
         (208 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g070860.1 | arabinogalactan protein | HC | chr8:30021958-3...   352   2e-97
Medtr8g070860.2 | arabinogalactan protein | HC | chr8:30021943-3...   347   5e-96

>Medtr8g070860.1 | arabinogalactan protein | HC |
           chr8:30021958-30024592 | 20130731
          Length = 206

 Score =  352 bits (902), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 172/208 (82%), Positives = 180/208 (86%), Gaps = 2/208 (0%)

Query: 1   MALNPQLFPNGMPVPFVNEMFVLARDGVEFEIDKIPGSGNHGGHLKTKGTIYLSNIRMVF 60
           MALNPQLFPNGMPV FVNEMFVLARDGVEFE+DKIPG+G+HGG LK KG IYLSNIRMVF
Sbjct: 1   MALNPQLFPNGMPVAFVNEMFVLARDGVEFEVDKIPGAGSHGGRLKAKGIIYLSNIRMVF 60

Query: 61  VAKSPAGGLTAFDMPLLYTSGEKFNQPIFHCNNLSGHVEPVVPDDQHRALYSTHTFKILF 120
           VAKSP  GL AFDMPLLY +GEKFNQPIFHCNN+SG VEPVVP DQHRALYSTH+FKI+F
Sbjct: 61  VAKSPVDGLYAFDMPLLYINGEKFNQPIFHCNNISGFVEPVVPADQHRALYSTHSFKIIF 120

Query: 121 KEGGCGTFIPLFFNLIASVXXXXXXXXXXXXXXXXVDPLQAAQTPVDEMMRHAYVDPNDP 180
           KEGGCGTFIPLFFNLIASV                VDPLQA+QTPVDEMMRHAYVDPNDP
Sbjct: 121 KEGGCGTFIPLFFNLIASV--RQYNQHANVPTESRVDPLQASQTPVDEMMRHAYVDPNDP 178

Query: 181 TRIFLQQPNADSQLRRRTYQPQEGGGHV 208
           TRIFLQQPNADSQLRRRTYQPQ  GGHV
Sbjct: 179 TRIFLQQPNADSQLRRRTYQPQTDGGHV 206


>Medtr8g070860.2 | arabinogalactan protein | HC |
           chr8:30021943-30024753 | 20130731
          Length = 205

 Score =  347 bits (889), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 172/208 (82%), Positives = 179/208 (86%), Gaps = 3/208 (1%)

Query: 1   MALNPQLFPNGMPVPFVNEMFVLARDGVEFEIDKIPGSGNHGGHLKTKGTIYLSNIRMVF 60
           MALNPQLFPNGMPV FVNEMFVLARDGVEFE+DKIPG+G HGG LK KG IYLSNIRMVF
Sbjct: 1   MALNPQLFPNGMPVAFVNEMFVLARDGVEFEVDKIPGAG-HGGRLKAKGIIYLSNIRMVF 59

Query: 61  VAKSPAGGLTAFDMPLLYTSGEKFNQPIFHCNNLSGHVEPVVPDDQHRALYSTHTFKILF 120
           VAKSP  GL AFDMPLLY +GEKFNQPIFHCNN+SG VEPVVP DQHRALYSTH+FKI+F
Sbjct: 60  VAKSPVDGLYAFDMPLLYINGEKFNQPIFHCNNISGFVEPVVPADQHRALYSTHSFKIIF 119

Query: 121 KEGGCGTFIPLFFNLIASVXXXXXXXXXXXXXXXXVDPLQAAQTPVDEMMRHAYVDPNDP 180
           KEGGCGTFIPLFFNLIASV                VDPLQA+QTPVDEMMRHAYVDPNDP
Sbjct: 120 KEGGCGTFIPLFFNLIASV--RQYNQHANVPTESRVDPLQASQTPVDEMMRHAYVDPNDP 177

Query: 181 TRIFLQQPNADSQLRRRTYQPQEGGGHV 208
           TRIFLQQPNADSQLRRRTYQPQ  GGHV
Sbjct: 178 TRIFLQQPNADSQLRRRTYQPQTDGGHV 205