Miyakogusa Predicted Gene

Lj4g3v1072330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1072330.1 Non Characterized Hit- tr|F6I4W9|F6I4W9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,38.1,3e-19,coiled-coil,NULL,gene.g53764.t1.1
         (166 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g009740.1 | WPP domain interacting protein, putative | HC ...   155   1e-38
Medtr8g070940.1 | transmembrane protein, putative | HC | chr8:30...   115   2e-26

>Medtr3g009740.1 | WPP domain interacting protein, putative | HC |
           chr3:2139608-2143381 | 20130731
          Length = 575

 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 113/168 (67%), Gaps = 7/168 (4%)

Query: 1   MLAIKDSRIAELEISLTGEKFDKEESTCPTGFLDKNFNNVESELETLFRQKVEAEIEYLT 60
           +L+ KDSRI ELE +L+  KF KEES    G+ +     VE E+E LFRQKVEAE+EYL 
Sbjct: 413 VLSSKDSRIVELETALSSGKFPKEESANTLGYKE-----VEYEIEDLFRQKVEAEVEYLA 467

Query: 61  ITKTMQNLKAASACM--LMEKQETVSGNKVQVPNNLEEAHSVGSRLKTRADEVDKYCGGI 118
           I K MQNLK  +     L+E+QE +S N+ QV N + +A S  S LK +A+E++KYCG  
Sbjct: 468 IAKVMQNLKVGADLQFTLLEEQEKLSENQAQVLNKIIDAESKASVLKNKAEELEKYCGDS 527

Query: 119 LQVEESFTIQRRVCKLTFFLFFQFMCLILAILLVKCPFSSDYGVIIPT 166
           L +EESF +Q+RVCK++F+LF QFM LIL    +    S + GV++PT
Sbjct: 528 LVIEESFLLQKRVCKVSFYLFLQFMMLILFFCFLVSQLSQNSGVVVPT 575


>Medtr8g070940.1 | transmembrane protein, putative | HC |
           chr8:30072686-30075038 | 20130731
          Length = 349

 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 88/142 (61%), Gaps = 9/142 (6%)

Query: 2   LAIKDSRIAELEISLTGEKFDKEESTCPTGFLDKNFNNVESELETLFRQKVEAEIEYLTI 61
           L  +D RI  LE  L    + KEEST   G   +    +ESELE+LF QKVEAE++YLTI
Sbjct: 194 LEQRDGRILILESDL----YTKEESTSTIG---EKCKELESELESLFLQKVEAEVKYLTI 246

Query: 62  TKTMQNLKAASACMLMEKQETVSGNKVQVPNNLEEAHSVGSRLKTRADEVDKYCGGILQV 121
              M++LK AS     EKQET+SGNKVQ  N LE A S  S +K R DE  KY G +L  
Sbjct: 247 KNMMKSLKVAST--FTEKQETMSGNKVQNTNKLEVAGSEDSIMKNRTDESGKYRGEVLGA 304

Query: 122 EESFTIQRRVCKLTFFLFFQFM 143
           EE+F IQRR+C LT+    QFM
Sbjct: 305 EETFMIQRRLCNLTYCFVLQFM 326