Miyakogusa Predicted Gene
- Lj4g3v1062150.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1062150.1 tr|I1N651|I1N651_SOYBN Structural maintenance of
chromosomes protein OS=Glycine max GN=Gma.41604 PE=,84.99,0,STRUCTURAL
MAINTENANCE OF CHROMOSOMES SMC4,NULL; STRUCTURAL MAINTENANCE OF
CHROMOSOMES SMC FAMILY ME,CUFF.48332.1
(633 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g072890.1 | structural maintenance of chromosomes protein ... 983 0.0
Medtr7g091430.1 | structural maintenance of chromosomes protein ... 879 0.0
Medtr1g069910.1 | structural maintenance of chromosomes protein ... 145 1e-34
Medtr0003s0460.1 | structural maintenance of chromosomes protein... 128 2e-29
Medtr8g037325.1 | structural maintenance of chromosomes protein ... 76 9e-14
Medtr1g051825.2 | structural maintenance of chromosomes protein ... 71 4e-12
Medtr1g051825.3 | structural maintenance of chromosomes protein ... 71 4e-12
Medtr1g051825.1 | structural maintenance of chromosomes protein ... 70 5e-12
Medtr3g110055.1 | structural maintenance of chromosomes protein ... 56 1e-07
>Medtr8g072890.1 | structural maintenance of chromosomes protein | HC
| chr8:30809876-30822392 | 20130731
Length = 1233
Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/633 (77%), Positives = 529/633 (83%)
Query: 1 MILEKQVHLLPMLEKNVSTPEGVPRLFDLVKVQDERMKLAFFAALRNTVVAKDLDQATRI 60
MILEKQV LLPM++K+VSTPEGVPRLFDLVKV+DERMKLAFFAALRNTVVAKDLDQA+RI
Sbjct: 601 MILEKQVDLLPMMKKSVSTPEGVPRLFDLVKVRDERMKLAFFAALRNTVVAKDLDQASRI 660
Query: 61 AYGGNYEFRRVVTLDGALFEKSXXXXXXXXXXXXXXXXXSIRAASVSVEAVTNAERQLSE 120
AYGGN EFRRVVTL GALFEKS SIRA +VS EAV +AE +LS
Sbjct: 661 AYGGNNEFRRVVTLGGALFEKSGTMSGGGSTPKGGKMGTSIRATNVSGEAVASAESELSG 720
Query: 121 MADKLNAIRQRIMDAVRRYQASEKTVTALEMELAKCQKEVDSLNSQHSYIEKQLDSLKAA 180
+ DKLN IRQR+MDAV+ YQ +EK + A EMELAK QKEVDSLNSQHSYIEKQL SL+ A
Sbjct: 721 LTDKLNKIRQRMMDAVKVYQEAEKKIAAWEMELAKSQKEVDSLNSQHSYIEKQLGSLEVA 780
Query: 181 SQPSEDELVRLKGLTEIITAEEREIKTLTDGSKQLKEKASDLQRNIENAGGEXXXXXXXX 240
S P E+EL RLK L +II+AEEREI LTDGSK+LKEK S+LQ+ IENAGGE
Sbjct: 781 SNPQENELDRLKELMKIISAEEREINRLTDGSKKLKEKVSELQKKIENAGGEKLKSQKLK 840
Query: 241 XXXXXXDIDKNHSEVNRLKVLIETGQKMMKKLTKGIXXXXXXXXXXXXXXXXXXXXXXXX 300
DIDK SE+NR KV IETGQKMMKKLTKGI
Sbjct: 841 VQKIQSDIDKASSEINRHKVQIETGQKMMKKLTKGIEESKKEKERLAEEREKLKGNFKEI 900
Query: 301 XXXAFIVQENYKKTQEMIDKHRDVLEEAKSEHDKMKKVVEELRASEVDADFKLKDMKKAY 360
AF VQ+NY+KT+EMI KHRD LEEA+SE+DKMKK V+ELRASEVDADFKLKDMKKAY
Sbjct: 901 EQKAFAVQKNYEKTEEMIKKHRDGLEEARSEYDKMKKAVDELRASEVDADFKLKDMKKAY 960
Query: 361 KELEMKGKGYKKRLDELQTAICKHLEQIQVDLLDVEKLKATLDDEHLHAACDLKRACEMV 420
KELE+KGKGY+KRLDELQTAI KHLEQIQVDL+D EKL ATL +EHL+AACDLK+ACE V
Sbjct: 961 KELEIKGKGYRKRLDELQTAISKHLEQIQVDLVDNEKLHATLTEEHLNAACDLKKACETV 1020
Query: 421 TLLEAQLKEMNPNLDSISEYRKKVALYNERVEELNTVTQERDDIKKQYDEWRKKRLDEFM 480
LLEAQLKEMNPNLDSI+EYRKKVALYNERVEELN VTQERDDIKKQ+DE RK+RLDEFM
Sbjct: 1021 ALLEAQLKEMNPNLDSIAEYRKKVALYNERVEELNAVTQERDDIKKQHDELRKRRLDEFM 1080
Query: 481 EGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEK 540
EGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEK
Sbjct: 1081 EGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEK 1140
Query: 541 TLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF 600
TLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF
Sbjct: 1141 TLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF 1200
Query: 601 ELADRLVGIYKTDNCTKSITIDPRSFVVCQKAV 633
ELADRLVGIYKTDNCTKSITIDP SFVVCQK
Sbjct: 1201 ELADRLVGIYKTDNCTKSITIDPCSFVVCQKGA 1233
>Medtr7g091430.1 | structural maintenance of chromosomes protein |
HC | chr7:36134715-36141630 | 20130731
Length = 851
Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/644 (71%), Positives = 503/644 (78%), Gaps = 21/644 (3%)
Query: 1 MILEKQVHLLPMLEKNVSTPEGVPRLFDLVKVQDERMKLAFFAALRNTVVAKDLDQATRI 60
MILEKQV LLPM++K+VSTPEGVPRLFD+VKVQDERMKLAFFAALRNTVVAKDLDQATRI
Sbjct: 216 MILEKQVDLLPMMKKSVSTPEGVPRLFDIVKVQDERMKLAFFAALRNTVVAKDLDQATRI 275
Query: 61 AYGGNYEFRRVVTLDGALFEKSXXXXXXXXXXXXXXXXXSIRAASVSVEAVTNAERQLSE 120
AYGGN EFRRVVTLDG LFEKS SIR +VS E V AE +LS
Sbjct: 276 AYGGNNEFRRVVTLDGELFEKSGTMSGGGSKPKGGKMGTSIRGTNVSGEDVARAETELSG 335
Query: 121 MADKLNAIRQRIMDAVRRYQASEKTVTALEMELAKCQKEVDSLNSQHSYIEKQLDSLKAA 180
+ ++LN IRQ +MDAV++YQ +EK + AL+M+LAK KEVDSLNSQHSYIEKQ SL+ A
Sbjct: 336 LTNELNEIRQGMMDAVKQYQDAEKNIAALKMKLAKSLKEVDSLNSQHSYIEKQFGSLEVA 395
Query: 181 SQPSEDELVRLKGLTEIITAEEREIKTLTDGSKQLKEKASDLQRNIENAGGEXXXXXXXX 240
S+P E+EL RL+ L I EEREI L DGSK+LKEK S+LQ IENAGGE
Sbjct: 396 SKPQENELDRLEELKNSIFPEEREINRLADGSKKLKEKVSELQTKIENAGGEKLKSQKLK 455
Query: 241 XXXXXX----DIDKNH------SEVNRLKVLIETGQKMMKKLTKGIXXXXXXXXXXXXXX 290
DI+KN S +NR KV IETG+KMMKKL KGI
Sbjct: 456 VQKIQSVSILDIEKNFKFNMMLSVINRHKVQIETGKKMMKKLAKGIEDSKKKERLTEEEE 515
Query: 291 XXXXXXXXXXXXXAFIVQENYKKTQEMIDKHRDVLEEAKSEHDKMKKVVEELRASEVDAD 350
+ VQENYKKTQEMIDKH DVLEEAKSEHDKMKK V+ELRASEVDAD
Sbjct: 516 KLNGNIKEIKQKKS-AVQENYKKTQEMIDKHWDVLEEAKSEHDKMKKSVDELRASEVDAD 574
Query: 351 FKLKDMKKAYKELEMKGKGYKKRLDELQTAICKHLEQIQVDLLDVEKLKATLDDEHLHAA 410
FKLKDMKKAYKELE+KGK YKKRLDELQ AI KHLEQIQVDL+D EKL+ATL +EHL+AA
Sbjct: 575 FKLKDMKKAYKELEIKGKSYKKRLDELQFAISKHLEQIQVDLVDQEKLQATLAEEHLNAA 634
Query: 411 CDLKRACEMVTLLEAQLKEMNPNLDSISEYRKKVALYNERVEELNTVTQERDDIKKQYDE 470
CDLK+ CE V LLEAQLKEMNPNLDSI+EYRKKV+L++ERVEELN VT+ERDDIKKQYDE
Sbjct: 635 CDLKKTCETVALLEAQLKEMNPNLDSIAEYRKKVSLHSERVEELNAVTRERDDIKKQYDE 694
Query: 471 WRKKRLDEFMEGFNAISLKLKEMY--QMITLGGDAELELVDSLDPFSEGVVFSVRPPKKS 528
RKKR+ I K Y QMITLGGDAELELVDSLDPFSEGVVFSVRPPKKS
Sbjct: 695 LRKKRV--------VIINKYYLFYCLQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKS 746
Query: 529 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDA 588
WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDA
Sbjct: 747 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDA 806
Query: 589 QFIIISLRNNMFELADRLVGIYKTDNCTKSITIDPRSFVVCQKA 632
QFIIISLRNNMFELADRLVGIYKTDNCT+SITIDP SFVVCQK+
Sbjct: 807 QFIIISLRNNMFELADRLVGIYKTDNCTQSITIDPSSFVVCQKS 850
>Medtr1g069910.1 | structural maintenance of chromosomes protein | HC
| chr1:30581189-30595745 | 20130731
Length = 1216
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 146/256 (57%), Gaps = 28/256 (10%)
Query: 392 LLDVEKLKATLDDEHLH----AACDLKRACEMVTLLEAQLKEMNPNLDSISEYRKKVALY 447
+ D +KL TL D D K+ + + ++++ PNL ++ +Y +
Sbjct: 957 VFDFDKLSRTLKDRRQSDRDKIEVDFKQKMDALI---SEIERTAPNLKALDQYEALLGKE 1013
Query: 448 NERVEELNTVTQERDDIKKQYDEWRKKRLDEFMEGFNAISLKLKEMYQMIT------LGG 501
EE V +E + +++E ++KR D FM+ FN I+ + ++Y+ +T LGG
Sbjct: 1014 RAVTEEFEAVRKEEKEKADRFNEVKQKRYDLFMDAFNHIAGNIDKIYKQLTKSNTHPLGG 1073
Query: 502 DAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYV 561
A L L + DPF G+ ++ PP K ++++ LSGGEKT+++LAL+F++H Y+P+P ++
Sbjct: 1074 TAYLNLENEDDPFLHGMKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPSPFFI 1133
Query: 562 MDEIDAALDFKNVSIVGHYVKDRT-------KDA------QFIIISLRNNMFELADRLVG 608
+DE+DAALD NV+ V +++ R+ +DA Q I+ISL+++ ++ A+ LVG
Sbjct: 1134 LDEVDAALDNLNVAKVAGFIRSRSCEGARTNQDADAGSGFQSIVISLKDSFYDKAEALVG 1193
Query: 609 IYKTD--NCTKSITID 622
+Y+ C+ +++ D
Sbjct: 1194 VYRDSERGCSSTLSFD 1209
>Medtr0003s0460.1 | structural maintenance of chromosomes protein | HC
| scaffold0003:229552-233442 | 20130731
Length = 1208
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 125/221 (56%), Gaps = 25/221 (11%)
Query: 423 LEAQLKEMNPNLDSISEYR---KKVALYNERVEELNTVTQERDDIKKQYDEWRKKRLDEF 479
L ++++ PNL ++ +Y +K L E E + +ER D ++ +++R + F
Sbjct: 981 LMSKIESTAPNLKALKQYDALDEKERLITEEFEAVMKEEKERTD---SFNAIKQERYNLF 1037
Query: 480 MEGFNAISLKLKEMYQMIT------LGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIA 533
M FN IS + ++Y+ +T GG A L L + DPF G+ ++ PP K++ ++
Sbjct: 1038 MGAFNRISGNIDKIYKQLTKSNTHLFGGTAYLYLENEDDPFQHGIKYTAMPPTKAFFDMD 1097
Query: 534 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-------- 585
LSGGEKT+S+LAL+F++H YKP+P +++DE+DAALD NV+ V +++ ++
Sbjct: 1098 QLSGGEKTISALALIFSIHSYKPSPFFILDEVDAALDNLNVAKVASFIRSKSCEGARANQ 1157
Query: 586 -----KDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITI 621
K Q I IS +N+ ++ A+ LVG+ + S T+
Sbjct: 1158 DTNDGKGFQIIQISQKNHFYDKAEVLVGVCRDSKSGSSRTL 1198
>Medtr8g037325.1 | structural maintenance of chromosomes protein | HC
| chr8:13910705-13922893 | 20130731
Length = 1175
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 447 YNERVEELNTVTQERDDIKKQYDEWRKKRLDEFMEGFNAISLKLKEMYQMITLGGDAELE 506
YN+ + + N + ++ IKK +E +K+ + + ++ ++ + G A+LE
Sbjct: 996 YNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWTKVNTDFGSIFSTLLPGTMAKLE 1055
Query: 507 LVDS---LDPFSEGVVFSVRPPKKSWK-NIANLSGGEKTLSSLALVFALHHYKPTPLYVM 562
+ LD V F WK +++ LSGG+++L +L+L+ AL +KP PLY++
Sbjct: 1056 PPEGFSFLDGLEVKVAFG-----SVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYIL 1110
Query: 563 DEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRL 606
DE+DAALD + +G +K+ +QFI++SL+ MF A+ L
Sbjct: 1111 DEVDAALDLSHTQNIGKMIKNHFPHSQFIVVSLKEGMFNNANVL 1154
>Medtr1g051825.2 | structural maintenance of chromosomes protein | HC
| chr1:20727128-20747784 | 20130731
Length = 1204
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 34/166 (20%)
Query: 474 KRLDEFME-GFNAISLKLKEMYQMITLGGDAELELVDSL---------------DPFSEG 517
+R DE +E F ++ +E++ + GG L ++ +P EG
Sbjct: 1013 QRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHDDDDQDEDGPREPNPEG 1072
Query: 518 -----------VVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEID 566
V F+ + +S K LSGG+KT+ +L L+FA+ P P Y+ DEID
Sbjct: 1073 RVEKYIGVKVKVSFTGQGETQSMKQ---LSGGQKTVVALTLIFAIQRCDPAPFYLFDEID 1129
Query: 567 AALDFKNVSIVGHYVKDRTKD---AQFIIISLRNNMFELADRLVGI 609
AALD + + VG+ ++ R D QFI + R + ++AD++ G+
Sbjct: 1130 AALDPQYRTAVGNMIR-RLADIANTQFITTTFRPELVKVADKIYGV 1174
>Medtr1g051825.3 | structural maintenance of chromosomes protein | HC
| chr1:20727036-20747784 | 20130731
Length = 1204
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 34/166 (20%)
Query: 474 KRLDEFME-GFNAISLKLKEMYQMITLGGDAELELVDSL---------------DPFSEG 517
+R DE +E F ++ +E++ + GG L ++ +P EG
Sbjct: 1013 QRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHDDDDQDEDGPREPNPEG 1072
Query: 518 -----------VVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEID 566
V F+ + +S K LSGG+KT+ +L L+FA+ P P Y+ DEID
Sbjct: 1073 RVEKYIGVKVKVSFTGQGETQSMKQ---LSGGQKTVVALTLIFAIQRCDPAPFYLFDEID 1129
Query: 567 AALDFKNVSIVGHYVKDRTKD---AQFIIISLRNNMFELADRLVGI 609
AALD + + VG+ ++ R D QFI + R + ++AD++ G+
Sbjct: 1130 AALDPQYRTAVGNMIR-RLADIANTQFITTTFRPELVKVADKIYGV 1174
>Medtr1g051825.1 | structural maintenance of chromosomes protein | HC
| chr1:20727826-20747759 | 20130731
Length = 1228
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 34/166 (20%)
Query: 474 KRLDEFME-GFNAISLKLKEMYQMITLGGDAELELVDSL---------------DPFSEG 517
+R DE +E F ++ +E++ + GG L ++ +P EG
Sbjct: 1037 QRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHDDDDQDEDGPREPNPEG 1096
Query: 518 -----------VVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEID 566
V F+ + +S K LSGG+KT+ +L L+FA+ P P Y+ DEID
Sbjct: 1097 RVEKYIGVKVKVSFTGQGETQSMKQ---LSGGQKTVVALTLIFAIQRCDPAPFYLFDEID 1153
Query: 567 AALDFKNVSIVGHYVKDRTKD---AQFIIISLRNNMFELADRLVGI 609
AALD + + VG+ ++ R D QFI + R + ++AD++ G+
Sbjct: 1154 AALDPQYRTAVGNMIR-RLADIANTQFITTTFRPELVKVADKIYGV 1198
>Medtr3g110055.1 | structural maintenance of chromosomes protein |
HC | chr3:50923928-50919567 | 20130731
Length = 488
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 531 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVG 578
N+ LSG +KT+ SLAL+F++ P P Y+ DEIDAALD + + VG
Sbjct: 405 NMKQLSGSQKTVVSLALIFSIQKCDPAPFYLFDEIDAALDTEYRTAVG 452