Miyakogusa Predicted Gene

Lj4g3v1062130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1062130.1 Non Characterized Hit- tr|I1L4N8|I1L4N8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38496
PE,74.56,0,TRANSCRIPTION INITIATION FACTOR IA (RRN3),RNA polymerase I
specific transcription initiation factor ,CUFF.48341.1
         (556 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g117680.1 | transcription initiation factor ia protein, pu...   716   0.0  
Medtr4g117680.2 | transcription initiation factor ia protein, pu...   716   0.0  
Medtr8g085920.1 | transcription initiation factor ia protein, pu...   120   5e-27
Medtr4g117730.1 | transcription initiation factor ia protein, pu...    84   5e-16

>Medtr4g117680.1 | transcription initiation factor ia protein,
           putative | HC | chr4:48845621-48836846 | 20130731
          Length = 635

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/555 (67%), Positives = 448/555 (80%), Gaps = 21/555 (3%)

Query: 11  EYPTPME-NPQLSDLQLVYHVRDALVAVTLGERENYDDLVGCLFRPLNWTLKKKHLNEDE 69
           EY + ME + +++DLQL Y+ RD L+A + G  ENY +LV CL +P      KKHL   +
Sbjct: 10  EYLSVMEEDVEINDLQLNYYYRDTLLAGSDG-GENYAELVKCL-QP------KKHLKSHD 61

Query: 70  IALVVTTLNALAGAVSYIDFSHHNALLSAVSSMSLWDYG---------TNVMDALTELIV 120
            A ++TTL +L+  VSYID   H +LLS++S +SLWDY           ++MDAL ELIV
Sbjct: 62  AAQLLTTLKSLSEVVSYIDPIQHESLLSSLSRLSLWDYAPTDRKYDAAADIMDALLELIV 121

Query: 121 SLASTNVKYMDLCLEMLVENFIPPNMKY-FLSLRNGLDRKNKVLARVHTALEQIAELVPL 179
           SLA++   Y+D CLE+LV++F+PP   + FL   NG+  KNKVL+RVH AL+ IA+LVPL
Sbjct: 122 SLAASKGIYVDFCLELLVKHFVPPKYAFEFLKNENGVGMKNKVLSRVHAALKHIADLVPL 181

Query: 180 APLRLSKIVLQKMPNVFSGEHMIVMYVENMLRLESGSIGETFGGAMLPALVDRLIQLDVE 239
           APLRLS IV+  MP  F+ E  IVMYVENML LESG IGE  GG MLPALVD+LI+LDVE
Sbjct: 182 APLRLSPIVVHSMPKRFAKEPEIVMYVENMLMLESGEIGEIVGGTMLPALVDKLIELDVE 241

Query: 240 IGWDGIMQEDAKGIFEMELENAAEFADENEKCDDMSSAELLKRKNLQGNLVVEKLDSLME 299
           IGWDG +QEDAK IF ME+++ A+F D++EK   M + ELL R NLQGN V EKLDSL+ 
Sbjct: 242 IGWDGKLQEDAKCIFAMEIQDFADFEDDDEKYYSMCTTELLNRNNLQGNQVAEKLDSLIV 301

Query: 300 LTFLHLETCQNNGRLAQVFNILLTSFKRTVLNAYKSKFTQFVMFYACALDPEGCGVKFAM 359
           LTFLHLE+CQ+ GRLA+VF+ILLTSFKRTVLN YKSKF QFVMFYACALD EGCGV FAM
Sbjct: 302 LTFLHLESCQSKGRLAEVFDILLTSFKRTVLNTYKSKFAQFVMFYACALDSEGCGVNFAM 361

Query: 360 FLAEMFGSDVNPPINRMSAVAYLASYLSRAKFLSAALVASILQRLVDWCFNYCKLHDFDM 419
            L EMF S VNPPI RMSAVAYLASYLSRAKFLS+ LVA+I+QRLVDWCF YCKLHDFDM
Sbjct: 362 VLTEMFDSRVNPPITRMSAVAYLASYLSRAKFLSSELVANIIQRLVDWCFAYCKLHDFDM 421

Query: 420 NPQAHQVFYSGCQAIMYVLCFRMRSLVDIPRLKLQLHNMPMEPIWKHKLSPLKVCLPTVV 479
           NPQAHQVFYS CQAIMY+LCFRM+SL+++PRLK++L  MPME IWKHKL+PLKVCLP+VV
Sbjct: 422 NPQAHQVFYSACQAIMYILCFRMKSLMEVPRLKVKLIKMPMELIWKHKLNPLKVCLPSVV 481

Query: 480 EEFLRQAKAAQLFMSSSETFVFNDLLESDDLSRSFGGMDRLDMFFPFDPCLLKKSESYIR 539
           EEFL+QAKAA+LFM S+E F+F+DLLE+ DLS++FGG++RLDMFFPFDPCLLKKSESY+R
Sbjct: 482 EEFLKQAKAARLFM-SAELFIFDDLLEA-DLSKAFGGINRLDMFFPFDPCLLKKSESYLR 539

Query: 540 PHFVRWSRVKTTYDS 554
           PHFVRWS+V+TTYD+
Sbjct: 540 PHFVRWSKVRTTYDT 554


>Medtr4g117680.2 | transcription initiation factor ia protein,
           putative | HC | chr4:48845621-48836846 | 20130731
          Length = 635

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/555 (67%), Positives = 448/555 (80%), Gaps = 21/555 (3%)

Query: 11  EYPTPME-NPQLSDLQLVYHVRDALVAVTLGERENYDDLVGCLFRPLNWTLKKKHLNEDE 69
           EY + ME + +++DLQL Y+ RD L+A + G  ENY +LV CL +P      KKHL   +
Sbjct: 10  EYLSVMEEDVEINDLQLNYYYRDTLLAGSDG-GENYAELVKCL-QP------KKHLKSHD 61

Query: 70  IALVVTTLNALAGAVSYIDFSHHNALLSAVSSMSLWDYG---------TNVMDALTELIV 120
            A ++TTL +L+  VSYID   H +LLS++S +SLWDY           ++MDAL ELIV
Sbjct: 62  AAQLLTTLKSLSEVVSYIDPIQHESLLSSLSRLSLWDYAPTDRKYDAAADIMDALLELIV 121

Query: 121 SLASTNVKYMDLCLEMLVENFIPPNMKY-FLSLRNGLDRKNKVLARVHTALEQIAELVPL 179
           SLA++   Y+D CLE+LV++F+PP   + FL   NG+  KNKVL+RVH AL+ IA+LVPL
Sbjct: 122 SLAASKGIYVDFCLELLVKHFVPPKYAFEFLKNENGVGMKNKVLSRVHAALKHIADLVPL 181

Query: 180 APLRLSKIVLQKMPNVFSGEHMIVMYVENMLRLESGSIGETFGGAMLPALVDRLIQLDVE 239
           APLRLS IV+  MP  F+ E  IVMYVENML LESG IGE  GG MLPALVD+LI+LDVE
Sbjct: 182 APLRLSPIVVHSMPKRFAKEPEIVMYVENMLMLESGEIGEIVGGTMLPALVDKLIELDVE 241

Query: 240 IGWDGIMQEDAKGIFEMELENAAEFADENEKCDDMSSAELLKRKNLQGNLVVEKLDSLME 299
           IGWDG +QEDAK IF ME+++ A+F D++EK   M + ELL R NLQGN V EKLDSL+ 
Sbjct: 242 IGWDGKLQEDAKCIFAMEIQDFADFEDDDEKYYSMCTTELLNRNNLQGNQVAEKLDSLIV 301

Query: 300 LTFLHLETCQNNGRLAQVFNILLTSFKRTVLNAYKSKFTQFVMFYACALDPEGCGVKFAM 359
           LTFLHLE+CQ+ GRLA+VF+ILLTSFKRTVLN YKSKF QFVMFYACALD EGCGV FAM
Sbjct: 302 LTFLHLESCQSKGRLAEVFDILLTSFKRTVLNTYKSKFAQFVMFYACALDSEGCGVNFAM 361

Query: 360 FLAEMFGSDVNPPINRMSAVAYLASYLSRAKFLSAALVASILQRLVDWCFNYCKLHDFDM 419
            L EMF S VNPPI RMSAVAYLASYLSRAKFLS+ LVA+I+QRLVDWCF YCKLHDFDM
Sbjct: 362 VLTEMFDSRVNPPITRMSAVAYLASYLSRAKFLSSELVANIIQRLVDWCFAYCKLHDFDM 421

Query: 420 NPQAHQVFYSGCQAIMYVLCFRMRSLVDIPRLKLQLHNMPMEPIWKHKLSPLKVCLPTVV 479
           NPQAHQVFYS CQAIMY+LCFRM+SL+++PRLK++L  MPME IWKHKL+PLKVCLP+VV
Sbjct: 422 NPQAHQVFYSACQAIMYILCFRMKSLMEVPRLKVKLIKMPMELIWKHKLNPLKVCLPSVV 481

Query: 480 EEFLRQAKAAQLFMSSSETFVFNDLLESDDLSRSFGGMDRLDMFFPFDPCLLKKSESYIR 539
           EEFL+QAKAA+LFM S+E F+F+DLLE+ DLS++FGG++RLDMFFPFDPCLLKKSESY+R
Sbjct: 482 EEFLKQAKAARLFM-SAELFIFDDLLEA-DLSKAFGGINRLDMFFPFDPCLLKKSESYLR 539

Query: 540 PHFVRWSRVKTTYDS 554
           PHFVRWS+V+TTYD+
Sbjct: 540 PHFVRWSKVRTTYDT 554


>Medtr8g085920.1 | transcription initiation factor ia protein,
           putative | LC | chr8:35649425-35647896 | 20130731
          Length = 115

 Score =  120 bits (300), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/79 (72%), Positives = 63/79 (79%)

Query: 192 MPNVFSGEHMIVMYVENMLRLESGSIGETFGGAMLPALVDRLIQLDVEIGWDGIMQEDAK 251
           MP  F+ E  IVMYVENML LESGSIGE  GG MLPA+VD+LI+LDVEIGWDG +QEDAK
Sbjct: 1   MPKRFAREPEIVMYVENMLMLESGSIGEIVGGTMLPAIVDKLIELDVEIGWDGKIQEDAK 60

Query: 252 GIFEMELENAAEFADENEK 270
            IFEME E  AEF D+ EK
Sbjct: 61  SIFEMEFEENAEFEDDGEK 79


>Medtr4g117730.1 | transcription initiation factor ia protein,
           putative | HC | chr4:48855560-48855857 | 20130731
          Length = 68

 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 56/68 (82%)

Query: 204 MYVENMLRLESGSIGETFGGAMLPALVDRLIQLDVEIGWDGIMQEDAKGIFEMELENAAE 263
           MYVENM  LE G++GE  GG MLP LVD+LI+ DV+IGWDG MQ+DAK +FEM LE+ AE
Sbjct: 1   MYVENMFSLEGGAVGEAVGGTMLPELVDKLIEFDVKIGWDGKMQDDAKCVFEMNLEDIAE 60

Query: 264 FADENEKC 271
           FAD++EKC
Sbjct: 61  FADDDEKC 68