Miyakogusa Predicted Gene

Lj4g3v1061080.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1061080.2 Non Characterized Hit- tr|D3BS35|D3BS35_POLPA
Putative nucleolar protein OS=Polysphondylium
pallidum,41.89,3e-18,SUBFAMILY NOT NAMED,NULL; NOP2(YEAST)-RELATED
NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING,NULL; no descript,CUFF.48326.2
         (390 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g075430.1 | NOL1/NOP2/sun family RNA methylase, putative |...   668   0.0  
Medtr8g075430.2 | NOL1/NOP2/sun family RNA methylase, putative |...   543   e-154
Medtr8g075450.1 | hypothetical protein | LC | chr8:31909180-3191...    72   9e-13
Medtr8g089980.1 | tRNA (cytosine(34)-C(5))-methyltransferase-lik...    59   6e-09
Medtr3g086950.1 | tRNA (cytosine(34)-C(5))-methyltransferase-lik...    58   2e-08
Medtr5g096020.1 | ribosomal RNA small subunit methyltransferase ...    50   4e-06

>Medtr8g075430.1 | NOL1/NOP2/sun family RNA methylase, putative | HC
           | chr8:31899500-31903095 | 20130731
          Length = 389

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/391 (82%), Positives = 345/391 (88%), Gaps = 3/391 (0%)

Query: 1   MEH-AAKAPLPEAFLHFLEANGLDPSIYTAVDSTPRYIRLKPGXXXXXXXXXXXXXXXXX 59
           MEH AA A LP+AFL+FLE+NG+DPSIYT++DSTPRYIRLKPG                 
Sbjct: 1   MEHGAATAALPDAFLNFLESNGIDPSIYTSIDSTPRYIRLKPGFEDYIEEFESEVKCKPQ 60

Query: 60  XXXWLPGFYSLPPHVHIAGSKPYKEGKIYGIDASSGAAVMALDISPGDHVLDLCAAPGAK 119
              WLPGFY+LPP++ IA +K Y+EGKIYGIDASSGAAVMAL I PGDHVLDLCAAPGAK
Sbjct: 61  KLDWLPGFYTLPPNIQIASTKAYQEGKIYGIDASSGAAVMALGIEPGDHVLDLCAAPGAK 120

Query: 120 LCMILDLLGDSGSVTGVDAARHRLAACRTMLQKYKLGDRCRLFVADGTAFSVIPQGFCSD 179
           LCM+LDLLGDSGSVTGVDAARHRLAACRTMLQKYKLGDRCRLFVADGT FSVIP GFCSD
Sbjct: 121 LCMMLDLLGDSGSVTGVDAARHRLAACRTMLQKYKLGDRCRLFVADGTTFSVIPLGFCSD 180

Query: 180 SKSCESGLEERMDVFKEWTSRRPWKERKRANQSGTPQLVSRSQPPELIYYGQHSGVIGLT 239
           S  CES LEERMDVFKEWTSRRPWKERKR  + GTPQ+VS+S PPELIYYG HSGVIGLT
Sbjct: 181 S--CESRLEERMDVFKEWTSRRPWKERKRTKKCGTPQVVSKSHPPELIYYGGHSGVIGLT 238

Query: 240 KGELYKTVSDNEIASHGYDKVLVDAECTHDGSVKHIQKFEHWGWLTLQRRLLDAERTDNL 299
           KGELYKT S NEIAS+GYDKVLVDAECTHDGS+KHIQKFE WGW+TLQRR+LDAERTD+L
Sbjct: 239 KGELYKTASKNEIASYGYDKVLVDAECTHDGSIKHIQKFEQWGWITLQRRVLDAERTDDL 298

Query: 300 HALQLNLLTNGFRLLKVGGSLVYSTCSLTVAQNEDVVEQFLKENVTAELMEIDVARNWPC 359
           HALQLNLLTNGFRLLKVGGSLVYSTCSLTVAQNEDV+EQFLKEN+TAEL EID ARNWPC
Sbjct: 299 HALQLNLLTNGFRLLKVGGSLVYSTCSLTVAQNEDVMEQFLKENITAELTEIDAARNWPC 358

Query: 360 KGGRIPKTWRFDSLTSQTSGLFVAKFTKVVI 390
           KGGRI KTWRFD LTSQTSGLFVAKF KVVI
Sbjct: 359 KGGRIRKTWRFDPLTSQTSGLFVAKFRKVVI 389


>Medtr8g075430.2 | NOL1/NOP2/sun family RNA methylase, putative | HC
           | chr8:31899500-31903095 | 20130731
          Length = 290

 Score =  543 bits (1399), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/292 (89%), Positives = 272/292 (93%), Gaps = 2/292 (0%)

Query: 99  MALDISPGDHVLDLCAAPGAKLCMILDLLGDSGSVTGVDAARHRLAACRTMLQKYKLGDR 158
           MAL I PGDHVLDLCAAPGAKLCM+LDLLGDSGSVTGVDAARHRLAACRTMLQKYKLGDR
Sbjct: 1   MALGIEPGDHVLDLCAAPGAKLCMMLDLLGDSGSVTGVDAARHRLAACRTMLQKYKLGDR 60

Query: 159 CRLFVADGTAFSVIPQGFCSDSKSCESGLEERMDVFKEWTSRRPWKERKRANQSGTPQLV 218
           CRLFVADGT FSVIP GFCSDS  CES LEERMDVFKEWTSRRPWKERKR  + GTPQ+V
Sbjct: 61  CRLFVADGTTFSVIPLGFCSDS--CESRLEERMDVFKEWTSRRPWKERKRTKKCGTPQVV 118

Query: 219 SRSQPPELIYYGQHSGVIGLTKGELYKTVSDNEIASHGYDKVLVDAECTHDGSVKHIQKF 278
           S+S PPELIYYG HSGVIGLTKGELYKT S NEIAS+GYDKVLVDAECTHDGS+KHIQKF
Sbjct: 119 SKSHPPELIYYGGHSGVIGLTKGELYKTASKNEIASYGYDKVLVDAECTHDGSIKHIQKF 178

Query: 279 EHWGWLTLQRRLLDAERTDNLHALQLNLLTNGFRLLKVGGSLVYSTCSLTVAQNEDVVEQ 338
           E WGW+TLQRR+LDAERTD+LHALQLNLLTNGFRLLKVGGSLVYSTCSLTVAQNEDV+EQ
Sbjct: 179 EQWGWITLQRRVLDAERTDDLHALQLNLLTNGFRLLKVGGSLVYSTCSLTVAQNEDVMEQ 238

Query: 339 FLKENVTAELMEIDVARNWPCKGGRIPKTWRFDSLTSQTSGLFVAKFTKVVI 390
           FLKEN+TAEL EID ARNWPCKGGRI KTWRFD LTSQTSGLFVAKF KVVI
Sbjct: 239 FLKENITAELTEIDAARNWPCKGGRIRKTWRFDPLTSQTSGLFVAKFRKVVI 290


>Medtr8g075450.1 | hypothetical protein | LC |
           chr8:31909180-31910379 | 20130731
          Length = 135

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/40 (85%), Positives = 36/40 (90%)

Query: 117 GAKLCMILDLLGDSGSVTGVDAARHRLAACRTMLQKYKLG 156
           GAK+CMILDLLGD GSVTGVDAARHRLA C T+LQKYK G
Sbjct: 5   GAKVCMILDLLGDLGSVTGVDAARHRLAVCITILQKYKAG 44


>Medtr8g089980.1 | tRNA (cytosine(34)-C(5))-methyltransferase-like
           protein | HC | chr8:37616552-37624367 | 20130731
          Length = 818

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 14/154 (9%)

Query: 240 KGELYKTVSDNEIASHGYDKVLVDAECTHDGSVKHIQKFEHWGWLTLQRRLLDAERTDNL 299
           KG   +   D+ I    +D+VL D  C+ DG+++     + W       R  ++     L
Sbjct: 258 KGNYDRMELDHNIHQLLFDRVLCDVPCSGDGTLRKAP--DMW-------RKWNSGLGQGL 308

Query: 300 HALQLNLLTNGFRLLKVGGSLVYSTCSLTVAQNEDVVEQFLKENVTAELMEIDVARNWPC 359
           H+LQ+ +   G  LLK+GG +VYSTCS+   +NE VV + L+      +  +DV+   P 
Sbjct: 309 HSLQVLIAMRGLSLLKIGGRMVYSTCSMNPIENEAVVAEVLRR-CGESVKLVDVSSELP- 366

Query: 360 KGGRIP--KTWR-FDSLTSQTSGLFVAKFTKVVI 390
           +  R P  K W+ +D  +   S   V KF + VI
Sbjct: 367 QLIRRPGLKRWKVYDKSSWFVSSKDVPKFRRSVI 400


>Medtr3g086950.1 | tRNA (cytosine(34)-C(5))-methyltransferase-like
           protein | HC | chr3:39418089-39425597 | 20130731
          Length = 784

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 15/116 (12%)

Query: 257 YDKVLVDAECTHDGSVKHIQKFEHWGWLTLQRRLLDAERTDNLHALQLNLLTNGFRLLKV 316
           +D+VL D  C+ DG+++         W     R  +    + LH LQ+ +   G  LLKV
Sbjct: 268 FDRVLCDVPCSGDGTLRKAPDL----W-----RRWNTGTGNGLHNLQILVAMRGLSLLKV 318

Query: 317 GGSLVYSTCSLTVAQNEDVVEQFLKENVTAELMEIDVARNWP---CKGGRIPKTWR 369
           GG +VYSTCS+   +NE V+ + L+      +  +DV+   P   C+ G   KTW+
Sbjct: 319 GGRMVYSTCSINPIENEAVIAEILRR-CEGSIELVDVSGELPQLICRPGL--KTWK 371


>Medtr5g096020.1 | ribosomal RNA small subunit methyltransferase B |
           HC | chr5:41982400-41975357 | 20130731
          Length = 529

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 12/122 (9%)

Query: 231 QHSGVIGLTKGELYKTVSDNEIASHGYDKVLVDAECTHDGSVKHIQKFEHWGWLTLQRRL 290
           Q  GV+     +L +T++D E      +KVL+DA C+  G    + K     W    R+L
Sbjct: 385 QVDGVVTTVHADL-RTLTDGEPLKS--NKVLLDAPCSGLGV---LSKRADLRW---NRKL 435

Query: 291 LDAERTDNLHALQLNLLTNGFRLLKVGGSLVYSTCSLTVAQNEDVVEQFLKENVTAELME 350
            D E+   L  LQ  LL     L+K GG LVYSTCS+   +N+D V  FL+ +    +  
Sbjct: 436 EDMEQ---LKKLQDELLDAASTLVKPGGVLVYSTCSIDPEENDDRVAAFLERHADFHIDP 492

Query: 351 ID 352
           +D
Sbjct: 493 VD 494