Miyakogusa Predicted Gene

Lj4g3v1037650.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1037650.1 tr|B9MXF8|B9MXF8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_593841 PE=4
SV=1,42.34,4e-18,SUBFAMILY NOT NAMED,NULL; AP
ENDONUCLEASE,Exodeoxyribonuclease III xth; zf-GRF,Zinc finger,
GRF-type,CUFF.48310.1
         (526 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g075810.1 | apurinic/apyrimidinic endonuclease | HC | chr8...   694   0.0  
Medtr8g075810.2 | apurinic/apyrimidinic endonuclease | HC | chr8...   694   0.0  

>Medtr8g075810.1 | apurinic/apyrimidinic endonuclease | HC |
           chr8:32057216-32050015 | 20130731
          Length = 613

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/440 (76%), Positives = 383/440 (87%), Gaps = 5/440 (1%)

Query: 88  RWETLLHQGRRIFVVGDLNIAPFAIDRCDAGPDFENNEFRRWFKSMLIENEGRFSDVFRA 147
           R E+LLHQGRRIFVVGDLNIAPFA+DRCDAGPDFE NEFRRWF+SMLIEN GRFSDVFRA
Sbjct: 178 RLESLLHQGRRIFVVGDLNIAPFAVDRCDAGPDFEKNEFRRWFRSMLIENGGRFSDVFRA 237

Query: 148 KHPNKTEAYTCWAQNTGAEVFNFGSRIDHILCAGSCLHESDDLKCHSFIRCHVMDCDILT 207
           KHP+K +AYTCW+Q++GAEVFN+GSRIDHILCAGSCLH+SDDL+ HSFI CHV +C+ILT
Sbjct: 238 KHPDKMDAYTCWSQSSGAEVFNYGSRIDHILCAGSCLHKSDDLQSHSFIGCHVKECEILT 297

Query: 208 EYKRCKPESTLSAHRWKGGRSIKLEGSDHAPVYMTLLEIPEVSLHSTPFLSARYVPMVHG 267
           +YKR KPESTLS+HRWKGG+SIKLEGSDHAPV  TL+ IPEVSLHSTP LS+RYVPMVHG
Sbjct: 298 QYKRFKPESTLSSHRWKGGQSIKLEGSDHAPVCATLMGIPEVSLHSTPSLSSRYVPMVHG 357

Query: 268 IQQTLVSMLVKRRVSEQTKSCEMVNEDISMGSTYESI-EPTNQTDSSTSECHFPSSQDSV 326
           +QQ+LVS+L+KRRVSE   SC+M N DI   ST E I EP ++  SST EC    +QDS 
Sbjct: 358 VQQSLVSLLMKRRVSE---SCKMANGDILTVSTCERIEEPVDKIGSSTCECDLFPNQDSE 414

Query: 327 CSILESKELSRGSSQEAAISKSGSGYEKSMPRKCNESKKKARNNQGSQLSLRSFFQKSTN 386
            SIL+  ELS GSSQE ++SKSGS YEKS+ +KCNESKKKARN+Q SQLS+RSFFQKST+
Sbjct: 415 GSILKPNELSAGSSQE-SVSKSGSVYEKSITQKCNESKKKARNSQSSQLSIRSFFQKSTS 473

Query: 387 LDNGVNNSCTDHSNNQAEPSQPDPHLRETSTAIDHSSSPKQCEVNTDACDLDLAELNDSS 446
           LDNGV +SC  +SNN+AEPSQP+  L ET T IDHSS+P Q E+N D C  DLAE+N+SS
Sbjct: 474 LDNGVKDSCISYSNNEAEPSQPNSQLLETCTIIDHSSNPGQDEINADVCGQDLAEINNSS 533

Query: 447 RKEEKSNVASLEWQRIQQMMQNSIPLCKGHKERCIARVVKKQGSNFGRRFYVCARAEGPA 506
           RKEEKSNVAS EWQRIQ++MQNSIPLCKGHKE CIARVVKKQG+NFGRRFY CARAEGPA
Sbjct: 534 RKEEKSNVASQEWQRIQKLMQNSIPLCKGHKEPCIARVVKKQGANFGRRFYTCARAEGPA 593

Query: 507 SNPEANCGYFKWATSKSRNK 526
           SNPEANCGYFKWATSKS+NK
Sbjct: 594 SNPEANCGYFKWATSKSKNK 613


>Medtr8g075810.2 | apurinic/apyrimidinic endonuclease | HC |
           chr8:32057216-32050015 | 20130731
          Length = 613

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/440 (76%), Positives = 383/440 (87%), Gaps = 5/440 (1%)

Query: 88  RWETLLHQGRRIFVVGDLNIAPFAIDRCDAGPDFENNEFRRWFKSMLIENEGRFSDVFRA 147
           R E+LLHQGRRIFVVGDLNIAPFA+DRCDAGPDFE NEFRRWF+SMLIEN GRFSDVFRA
Sbjct: 178 RLESLLHQGRRIFVVGDLNIAPFAVDRCDAGPDFEKNEFRRWFRSMLIENGGRFSDVFRA 237

Query: 148 KHPNKTEAYTCWAQNTGAEVFNFGSRIDHILCAGSCLHESDDLKCHSFIRCHVMDCDILT 207
           KHP+K +AYTCW+Q++GAEVFN+GSRIDHILCAGSCLH+SDDL+ HSFI CHV +C+ILT
Sbjct: 238 KHPDKMDAYTCWSQSSGAEVFNYGSRIDHILCAGSCLHKSDDLQSHSFIGCHVKECEILT 297

Query: 208 EYKRCKPESTLSAHRWKGGRSIKLEGSDHAPVYMTLLEIPEVSLHSTPFLSARYVPMVHG 267
           +YKR KPESTLS+HRWKGG+SIKLEGSDHAPV  TL+ IPEVSLHSTP LS+RYVPMVHG
Sbjct: 298 QYKRFKPESTLSSHRWKGGQSIKLEGSDHAPVCATLMGIPEVSLHSTPSLSSRYVPMVHG 357

Query: 268 IQQTLVSMLVKRRVSEQTKSCEMVNEDISMGSTYESI-EPTNQTDSSTSECHFPSSQDSV 326
           +QQ+LVS+L+KRRVSE   SC+M N DI   ST E I EP ++  SST EC    +QDS 
Sbjct: 358 VQQSLVSLLMKRRVSE---SCKMANGDILTVSTCERIEEPVDKIGSSTCECDLFPNQDSE 414

Query: 327 CSILESKELSRGSSQEAAISKSGSGYEKSMPRKCNESKKKARNNQGSQLSLRSFFQKSTN 386
            SIL+  ELS GSSQE ++SKSGS YEKS+ +KCNESKKKARN+Q SQLS+RSFFQKST+
Sbjct: 415 GSILKPNELSAGSSQE-SVSKSGSVYEKSITQKCNESKKKARNSQSSQLSIRSFFQKSTS 473

Query: 387 LDNGVNNSCTDHSNNQAEPSQPDPHLRETSTAIDHSSSPKQCEVNTDACDLDLAELNDSS 446
           LDNGV +SC  +SNN+AEPSQP+  L ET T IDHSS+P Q E+N D C  DLAE+N+SS
Sbjct: 474 LDNGVKDSCISYSNNEAEPSQPNSQLLETCTIIDHSSNPGQDEINADVCGQDLAEINNSS 533

Query: 447 RKEEKSNVASLEWQRIQQMMQNSIPLCKGHKERCIARVVKKQGSNFGRRFYVCARAEGPA 506
           RKEEKSNVAS EWQRIQ++MQNSIPLCKGHKE CIARVVKKQG+NFGRRFY CARAEGPA
Sbjct: 534 RKEEKSNVASQEWQRIQKLMQNSIPLCKGHKEPCIARVVKKQGANFGRRFYTCARAEGPA 593

Query: 507 SNPEANCGYFKWATSKSRNK 526
           SNPEANCGYFKWATSKS+NK
Sbjct: 594 SNPEANCGYFKWATSKSKNK 613