Miyakogusa Predicted Gene

Lj4g3v1037490.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1037490.4 tr|Q0JFE3|Q0JFE3_ORYSJ Os04g0110600 protein
OS=Oryza sativa subsp. japonica GN=Os04g0110600 PE=4
SV=,82.69,3e-18,ZF_RANBP2_2,Zinc finger, RanBP2-type; ZINC FINGER
PROTEIN,NULL; Zinc finger domain,Zinc finger, RanB,CUFF.48442.4
         (379 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g075970.1 | zinc finger (Ran-binding) family protein | HC ...   504   e-143
Medtr8g075970.5 | zinc finger (Ran-binding) family protein | HC ...   496   e-140
Medtr8g075970.4 | zinc finger (Ran-binding) family protein | HC ...   370   e-102
Medtr8g075970.2 | zinc finger (Ran-binding) family protein | HC ...   353   2e-97
Medtr8g075970.3 | zinc finger (Ran-binding) family protein | HC ...   353   2e-97
Medtr4g113840.1 | zinc finger (Ran-binding) family protein | HC ...    55   2e-07
Medtr3g107610.2 | zinc finger (Ran-binding) family protein | HC ...    50   3e-06
Medtr2g054750.1 | zinc finger (Ran-binding) family protein | HC ...    50   3e-06
Medtr3g107610.1 | zinc finger (Ran-binding) family protein | HC ...    49   1e-05

>Medtr8g075970.1 | zinc finger (Ran-binding) family protein | HC |
           chr8:32132441-32128798 | 20130731
          Length = 316

 Score =  504 bits (1297), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/322 (77%), Positives = 268/322 (83%), Gaps = 15/322 (4%)

Query: 60  DWECSSCNNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREK 119
           DWECS CNNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREK
Sbjct: 8   DWECSGCNNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREK 67

Query: 120 CKKCGQPKEVAAMPAVAMTGASFPPYPHYVSRAPGGPAQKMNIGFNGLIGNGVLPQPLHL 179
           CKKCGQPKEVAAMPA+AMTGASF  YPHY SR PGGP Q+MNI   GLIGNG  PQ L+L
Sbjct: 68  CKKCGQPKEVAAMPAIAMTGASFSAYPHYFSRVPGGPEQRMNI---GLIGNGGPPQSLNL 124

Query: 180 NSNWPVTGADKYGVHPVSMWLPGGNYSSGHPYVNPSSQDLSIAKGWRNGDWICNCGFHNY 239
           N NWPVTGA K+G+  VS+W PG NYSSGHPY N SSQ+     GWRNGDW+CNCGFHNY
Sbjct: 125 NYNWPVTGAQKFGLQSVSLWPPGVNYSSGHPYENSSSQN---PNGWRNGDWVCNCGFHNY 181

Query: 240 SSRSQCKKCDAFPPALGTKRLASEELVYDWDNKRLNVGTTNDRQHTFTSLEQAVGNSADP 299
           SSR+QCKKC+A PPALGTKRLASEEL YDWDNKRLNVG+TND+Q       QAVG SA+P
Sbjct: 182 SSRAQCKKCNASPPALGTKRLASEELGYDWDNKRLNVGSTNDQQ-------QAVGTSAEP 234

Query: 300 KPGVFPSYPGINSSTA--XXXXXXXXXXXXVSTPALLGKGAKQWRSGDWMCTNCNNHNYA 357
           +P +FP+Y GINSS+A              VS+ ALLGKGAKQWRSGDWMCTNCNNHNYA
Sbjct: 235 RPALFPAYTGINSSSAPSLPMPPLFPIPPQVSSTALLGKGAKQWRSGDWMCTNCNNHNYA 294

Query: 358 SRLHCNRCKTQRVAPMQPVNVV 379
           SRL CNRCKT RVAPMQPVNVV
Sbjct: 295 SRLECNRCKTLRVAPMQPVNVV 316


>Medtr8g075970.5 | zinc finger (Ran-binding) family protein | HC |
           chr8:32132441-32128798 | 20130731
          Length = 325

 Score =  496 bits (1276), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/331 (75%), Positives = 268/331 (80%), Gaps = 24/331 (7%)

Query: 60  DWECSSCNNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREK 119
           DWECS CNNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREK
Sbjct: 8   DWECSGCNNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREK 67

Query: 120 CKKCGQPKEVAAMPAVAMTGASFPPYPHYVSRAPGGPAQKMNIGFNGLIGNGVLPQPLHL 179
           CKKCGQPKEVAAMPA+AMTGASF  YPHY SR PGGP Q+MNI   GLIGNG  PQ L+L
Sbjct: 68  CKKCGQPKEVAAMPAIAMTGASFSAYPHYFSRVPGGPEQRMNI---GLIGNGGPPQSLNL 124

Query: 180 NSNWPVTGADKYGVHPVSMWLPGGNYSSGHPYVNPSSQDLSIAKGWRNGDWICNCGFHNY 239
           N NWPVTGA K+G+  VS+W PG NYSSGHPY N SSQ+     GWRNGDW+CNCGFHNY
Sbjct: 125 NYNWPVTGAQKFGLQSVSLWPPGVNYSSGHPYENSSSQN---PNGWRNGDWVCNCGFHNY 181

Query: 240 SSRSQCKKCDAFPP---------ALGTKRLASEELVYDWDNKRLNVGTTNDRQHTFTSLE 290
           SSR+QCKKC+A PP         +LGTKRLASEEL YDWDNKRLNVG+TND+Q       
Sbjct: 182 SSRAQCKKCNASPPGIASFLGVDSLGTKRLASEELGYDWDNKRLNVGSTNDQQ------- 234

Query: 291 QAVGNSADPKPGVFPSYPGINSSTA--XXXXXXXXXXXXVSTPALLGKGAKQWRSGDWMC 348
           QAVG SA+P+P +FP+Y GINSS+A              VS+ ALLGKGAKQWRSGDWMC
Sbjct: 235 QAVGTSAEPRPALFPAYTGINSSSAPSLPMPPLFPIPPQVSSTALLGKGAKQWRSGDWMC 294

Query: 349 TNCNNHNYASRLHCNRCKTQRVAPMQPVNVV 379
           TNCNNHNYASRL CNRCKT RVAPMQPVNVV
Sbjct: 295 TNCNNHNYASRLECNRCKTLRVAPMQPVNVV 325


>Medtr8g075970.4 | zinc finger (Ran-binding) family protein | HC |
           chr8:32132441-32128798 | 20130731
          Length = 278

 Score =  370 bits (950), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/229 (78%), Positives = 192/229 (83%), Gaps = 15/229 (6%)

Query: 60  DWECSSCNNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREK 119
           DWECS CNNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREK
Sbjct: 8   DWECSGCNNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREK 67

Query: 120 CKKCGQPKEVAAMPAVAMTGASFPPYPHYVSRAPGGPAQKMNIGFNGLIGNGVLPQPLHL 179
           CKKCGQPKEVAAMPA+AMTGASF  YPHY SR PGGP Q+MNI   GLIGNG  PQ L+L
Sbjct: 68  CKKCGQPKEVAAMPAIAMTGASFSAYPHYFSRVPGGPEQRMNI---GLIGNGGPPQSLNL 124

Query: 180 NSNWPVTGADKYGVHPVSMWLPGGNYSSGHPYVNPSSQDLSIAKGWRNGDWICNCGFHNY 239
           N NWPVTGA K+G+  VS+W PG NYSSGHPY N SSQ+     GWRNGDW+CNCGFHNY
Sbjct: 125 NYNWPVTGAQKFGLQSVSLWPPGVNYSSGHPYENSSSQN---PNGWRNGDWVCNCGFHNY 181

Query: 240 SSRSQCKKCDAFPP---------ALGTKRLASEELVYDWDNKRLNVGTT 279
           SSR+QCKKC+A PP         +LGTKRLASEEL YDWDNKRLNVG+ 
Sbjct: 182 SSRAQCKKCNASPPGIASFLGVDSLGTKRLASEELGYDWDNKRLNVGSV 230


>Medtr8g075970.2 | zinc finger (Ran-binding) family protein | HC |
           chr8:32132441-32128798 | 20130731
          Length = 237

 Score =  353 bits (905), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 179/250 (71%), Positives = 197/250 (78%), Gaps = 15/250 (6%)

Query: 132 MPAVAMTGASFPPYPHYVSRAPGGPAQKMNIGFNGLIGNGVLPQPLHLNSNWPVTGADKY 191
           MPA+AMTGASF  YPHY SR PGGP Q+MNIG   LIGNG  PQ L+LN NWPVTGA K+
Sbjct: 1   MPAIAMTGASFSAYPHYFSRVPGGPEQRMNIG---LIGNGGPPQSLNLNYNWPVTGAQKF 57

Query: 192 GVHPVSMWLPGGNYSSGHPYVNPSSQDLSIAKGWRNGDWICNCGFHNYSSRSQCKKCDAF 251
           G+  VS+W PG NYSSGHPY N SSQ+     GWRNGDW+CNCGFHNYSSR+QCKKC+A 
Sbjct: 58  GLQSVSLWPPGVNYSSGHPYENSSSQN---PNGWRNGDWVCNCGFHNYSSRAQCKKCNAS 114

Query: 252 PPALGTKRLASEELVYDWDNKRLNVGTTNDRQHTFTSLEQAVGNSADPKPGVFPSYPGIN 311
           PPALGTKRLASEEL YDWDNKRLNVG+TND+Q       QAVG SA+P+P +FP+Y GIN
Sbjct: 115 PPALGTKRLASEELGYDWDNKRLNVGSTNDQQ-------QAVGTSAEPRPALFPAYTGIN 167

Query: 312 SSTA--XXXXXXXXXXXXVSTPALLGKGAKQWRSGDWMCTNCNNHNYASRLHCNRCKTQR 369
           SS+A              VS+ ALLGKGAKQWRSGDWMCTNCNNHNYASRL CNRCKT R
Sbjct: 168 SSSAPSLPMPPLFPIPPQVSSTALLGKGAKQWRSGDWMCTNCNNHNYASRLECNRCKTLR 227

Query: 370 VAPMQPVNVV 379
           VAPMQPVNVV
Sbjct: 228 VAPMQPVNVV 237


>Medtr8g075970.3 | zinc finger (Ran-binding) family protein | HC |
           chr8:32132440-32128798 | 20130731
          Length = 237

 Score =  353 bits (905), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 179/250 (71%), Positives = 197/250 (78%), Gaps = 15/250 (6%)

Query: 132 MPAVAMTGASFPPYPHYVSRAPGGPAQKMNIGFNGLIGNGVLPQPLHLNSNWPVTGADKY 191
           MPA+AMTGASF  YPHY SR PGGP Q+MNIG   LIGNG  PQ L+LN NWPVTGA K+
Sbjct: 1   MPAIAMTGASFSAYPHYFSRVPGGPEQRMNIG---LIGNGGPPQSLNLNYNWPVTGAQKF 57

Query: 192 GVHPVSMWLPGGNYSSGHPYVNPSSQDLSIAKGWRNGDWICNCGFHNYSSRSQCKKCDAF 251
           G+  VS+W PG NYSSGHPY N SSQ+     GWRNGDW+CNCGFHNYSSR+QCKKC+A 
Sbjct: 58  GLQSVSLWPPGVNYSSGHPYENSSSQN---PNGWRNGDWVCNCGFHNYSSRAQCKKCNAS 114

Query: 252 PPALGTKRLASEELVYDWDNKRLNVGTTNDRQHTFTSLEQAVGNSADPKPGVFPSYPGIN 311
           PPALGTKRLASEEL YDWDNKRLNVG+TND+Q       QAVG SA+P+P +FP+Y GIN
Sbjct: 115 PPALGTKRLASEELGYDWDNKRLNVGSTNDQQ-------QAVGTSAEPRPALFPAYTGIN 167

Query: 312 SSTA--XXXXXXXXXXXXVSTPALLGKGAKQWRSGDWMCTNCNNHNYASRLHCNRCKTQR 369
           SS+A              VS+ ALLGKGAKQWRSGDWMCTNCNNHNYASRL CNRCKT R
Sbjct: 168 SSSAPSLPMPPLFPIPPQVSSTALLGKGAKQWRSGDWMCTNCNNHNYASRLECNRCKTLR 227

Query: 370 VAPMQPVNVV 379
           VAPMQPVNVV
Sbjct: 228 VAPMQPVNVV 237


>Medtr4g113840.1 | zinc finger (Ran-binding) family protein | HC |
           chr4:46857090-46858933 | 20130731
          Length = 140

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 57/156 (36%), Gaps = 40/156 (25%)

Query: 102 GDWICTGCTNNNYASREKCKKCGQPKEVAAMPAVAMTGASFPPYPHYVSRAPGGPAQKMN 161
           GDW+C  C + N+  RE C+ CG PK     P+          Y    + A       MN
Sbjct: 6   GDWMCGACEHINFKKREACQNCGYPKYGGPDPSTYR-------YNRTETLAGDWFCTSMN 58

Query: 162 IGFNGLIGN------GVLPQPLHLNSNWPVTGADKYGVHPVSMWLPGGNYSSGHPYVNPS 215
            G +           G    P        + G+  YG                       
Sbjct: 59  CGAHNYASRSNCYRCGAFKDPYSSGYGGNMVGSGGYG----------------------- 95

Query: 216 SQDLSIAKGWRNGDWIC---NCGFHNYSSRSQCKKC 248
             D S   GW++GDWIC    CG HNY+SR++C KC
Sbjct: 96  -SDCSSPPGWKSGDWICPRIGCGIHNYASRTECYKC 130


>Medtr3g107610.2 | zinc finger (Ran-binding) family protein | HC |
           chr3:49625913-49625045 | 20130731
          Length = 175

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 19/92 (20%)

Query: 60  DWECSSCNNRNYAFRSFCNRCKQPRLL-----VD------------TKTPADSKWLPRIG 102
           DW C +CN+ N+  R  C RC + R+      VD            +  P  +    R G
Sbjct: 6   DWNCRTCNHLNFQRRESCQRCGESRMTSGCGAVDFGGSFLGGRGSSSPFPFTTGPDVRPG 65

Query: 103 DWICT--GCTNNNYASREKCKKCGQPKEVAAM 132
           DW CT   C  +N+ASR  C KCG PK++   
Sbjct: 66  DWYCTVGNCGAHNFASRSSCFKCGAPKDIDTF 97


>Medtr2g054750.1 | zinc finger (Ran-binding) family protein | HC |
           chr2:23383920-23382437 | 20130731
          Length = 128

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 60  DWECS--SCNNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLP--RIGDWICT--GCTNNN 113
           DW CS  +C   NYA R+ C RC    L  D    +D  + P  + GDWICT  GC  +N
Sbjct: 51  DWYCSGMNCGAHNYASRTSCYRCGA--LKNDNSYGSDCNYPPGWKTGDWICTRYGCGVHN 108

Query: 114 YASREKCKKCGQPKEVAA 131
           YASR +C KC  PK    
Sbjct: 109 YASRGECFKCKTPKSFGG 126


>Medtr3g107610.1 | zinc finger (Ran-binding) family protein | HC |
           chr3:49625913-49624495 | 20130731
          Length = 170

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 19/89 (21%)

Query: 60  DWECSSCNNRNYAFRSFCNRCKQPRLL-----VD----------TKTPADSKWLP--RIG 102
           DW C +CN+ N+  R  C RC + R+      VD          + +P      P  R G
Sbjct: 6   DWNCRTCNHLNFQRRESCQRCGESRMTSGCGAVDFGGSFLGGRGSSSPFPFTTGPDVRPG 65

Query: 103 DWICT--GCTNNNYASREKCKKCGQPKEV 129
           DW CT   C  +N+ASR  C KCG PK++
Sbjct: 66  DWYCTVGNCGAHNFASRSSCFKCGAPKDI 94