Miyakogusa Predicted Gene

Lj4g3v0998950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0998950.1 Non Characterized Hit- tr|K3YVX1|K3YVX1_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si018417,71.83,3e-19,Ribosomal_L7_L12,Ribosomal protein L7/L12;
ClpS-like,Ribosomal protein L7/L12, C-terminal/adaptor pr,CUFF.48256.1
         (197 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g076780.2 | 50S ribosomal protein L7/L12 | HC | chr8:32563...   218   2e-57
Medtr8g076780.1 | 50S ribosomal protein L7/L12 | HC | chr8:32563...   218   2e-57
Medtr7g053520.1 | 50S ribosomal protein L7/L12 | HC | chr7:18863...   107   8e-24
Medtr2g031760.1 | 50S ribosomal protein L7/L12 | HC | chr2:12037...   105   3e-23
Medtr2g064300.1 | 50S ribosomal protein L7/L12 | HC | chr2:27244...   103   7e-23
Medtr2g064300.2 | 50S ribosomal protein L7/L12 | HC | chr2:27244...   103   7e-23
Medtr2g064300.3 | 50S ribosomal protein L7/L12 | HC | chr2:27242...   103   7e-23
Medtr2g031960.1 | 50S ribosomal protein L7/L12 | HC | chr2:12139...    99   2e-21
Medtr6g006060.1 | 50S ribosomal protein L7/L12 | HC | chr6:99234...    60   2e-09

>Medtr8g076780.2 | 50S ribosomal protein L7/L12 | HC |
           chr8:32563651-32561357 | 20130731
          Length = 195

 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/200 (64%), Positives = 138/200 (69%), Gaps = 13/200 (6%)

Query: 2   RFTHFSLLRKTLTQNPKFPSSPSIPRFAPXXXXXXXXXXXCRSLFARNCSTATP--EKVS 59
           RF  FS LRKTL QNP F  SP IP+  P                 RN +T +P  E VS
Sbjct: 5   RFLQFSHLRKTLIQNPNF-LSPQIPK--PYIIPPNPKS------HLRNYNTDSPNHENVS 55

Query: 60  AIVDELTGLTLLEVMDLVEVMREKKGINELPIAMLMVPGMGIRGLPXXXXXXXXXXXXXX 119
           AIV+EL GLTL+E MDLVEVMREKKGINELPI MLMVPGMGIRG+P              
Sbjct: 56  AIVEELAGLTLIEAMDLVEVMREKKGINELPIMMLMVPGMGIRGMPRGVGGGKGGGGSEK 115

Query: 120 XX--XXXXXXTAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKGVTK 177
                     TAFDVKLD FDAASKIKVIKEVR+FTSLGLKEAKDLVEK PT+LKKGVTK
Sbjct: 116 GGEVKKVEEKTAFDVKLDGFDAASKIKVIKEVRSFTSLGLKEAKDLVEKSPTLLKKGVTK 175

Query: 178 EEAEAIIAKLKDVGAKASME 197
           EEAE IIAKLK+VGAKASME
Sbjct: 176 EEAEGIIAKLKEVGAKASME 195


>Medtr8g076780.1 | 50S ribosomal protein L7/L12 | HC |
           chr8:32563651-32560797 | 20130731
          Length = 195

 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/200 (64%), Positives = 138/200 (69%), Gaps = 13/200 (6%)

Query: 2   RFTHFSLLRKTLTQNPKFPSSPSIPRFAPXXXXXXXXXXXCRSLFARNCSTATP--EKVS 59
           RF  FS LRKTL QNP F  SP IP+  P                 RN +T +P  E VS
Sbjct: 5   RFLQFSHLRKTLIQNPNF-LSPQIPK--PYIIPPNPKS------HLRNYNTDSPNHENVS 55

Query: 60  AIVDELTGLTLLEVMDLVEVMREKKGINELPIAMLMVPGMGIRGLPXXXXXXXXXXXXXX 119
           AIV+EL GLTL+E MDLVEVMREKKGINELPI MLMVPGMGIRG+P              
Sbjct: 56  AIVEELAGLTLIEAMDLVEVMREKKGINELPIMMLMVPGMGIRGMPRGVGGGKGGGGSEK 115

Query: 120 XX--XXXXXXTAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKGVTK 177
                     TAFDVKLD FDAASKIKVIKEVR+FTSLGLKEAKDLVEK PT+LKKGVTK
Sbjct: 116 GGEVKKVEEKTAFDVKLDGFDAASKIKVIKEVRSFTSLGLKEAKDLVEKSPTLLKKGVTK 175

Query: 178 EEAEAIIAKLKDVGAKASME 197
           EEAE IIAKLK+VGAKASME
Sbjct: 176 EEAEGIIAKLKEVGAKASME 195


>Medtr7g053520.1 | 50S ribosomal protein L7/L12 | HC |
           chr7:18863632-18861167 | 20130731
          Length = 217

 Score =  107 bits (267), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/143 (46%), Positives = 87/143 (60%), Gaps = 8/143 (5%)

Query: 56  EKVSAIVDELTGLTLLEVMDLVEVMREKKGINELPIAMLMVPG-MGIRGLPXXXXXXXXX 114
           E+V  +VDE+  LTL E  +L   + +K GI E+P    M PG + + G+          
Sbjct: 82  ERVFKLVDEVASLTLAEGAELGLTLMKKMGIKEMPNVGFMKPGSVNLAGM-------AAK 134

Query: 115 XXXXXXXXXXXXXTAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKG 174
                        T F++KL +++AASKIKVIKEVR FT LGLKEAKDLVEK P+++KKG
Sbjct: 135 ASIEAKEEQKPEKTVFELKLTSYEAASKIKVIKEVRGFTDLGLKEAKDLVEKTPSIIKKG 194

Query: 175 VTKEEAEAIIAKLKDVGAKASME 197
           V+KEE + II KLK +GA   ME
Sbjct: 195 VSKEEGDQIIEKLKALGAVVVME 217


>Medtr2g031760.1 | 50S ribosomal protein L7/L12 | HC |
           chr2:12037474-12040216 | 20130731
          Length = 190

 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 61/70 (87%)

Query: 128 TAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKGVTKEEAEAIIAKL 187
           TAFDVKL+ FD ASKIKVIKEVR FT+LGLKEAKDLVEKVPTVLK+GVTK+EA +II K+
Sbjct: 121 TAFDVKLEKFDTASKIKVIKEVRAFTNLGLKEAKDLVEKVPTVLKQGVTKDEANSIIEKI 180

Query: 188 KDVGAKASME 197
           K VG  A ME
Sbjct: 181 KAVGGVAVME 190


>Medtr2g064300.1 | 50S ribosomal protein L7/L12 | HC |
           chr2:27244013-27240768 | 20130731
          Length = 216

 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 86/143 (60%), Gaps = 8/143 (5%)

Query: 56  EKVSAIVDELTGLTLLEVMDLVEVMREKKGINELPIAMLMVPG-MGIRGLPXXXXXXXXX 114
           E+V  +VDE+  LTL E  +L  ++ +K GI E+P    M  G   + G+          
Sbjct: 81  ERVFRLVDEVASLTLAEGAELGLILMKKMGIKEMPNVGYMKAGSANLAGM-------ATK 133

Query: 115 XXXXXXXXXXXXXTAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKG 174
                        T F++KL +F+AASKIKVIKEVR FT LGLKEAKD+VEK P+++KKG
Sbjct: 134 TTTAAQEEVKPEKTVFELKLLSFEAASKIKVIKEVRGFTDLGLKEAKDIVEKTPSIIKKG 193

Query: 175 VTKEEAEAIIAKLKDVGAKASME 197
           V+KEE E II K+K +GA   +E
Sbjct: 194 VSKEEGEQIIEKMKALGANVVLE 216


>Medtr2g064300.2 | 50S ribosomal protein L7/L12 | HC |
           chr2:27244007-27240768 | 20130731
          Length = 216

 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 86/143 (60%), Gaps = 8/143 (5%)

Query: 56  EKVSAIVDELTGLTLLEVMDLVEVMREKKGINELPIAMLMVPG-MGIRGLPXXXXXXXXX 114
           E+V  +VDE+  LTL E  +L  ++ +K GI E+P    M  G   + G+          
Sbjct: 81  ERVFRLVDEVASLTLAEGAELGLILMKKMGIKEMPNVGYMKAGSANLAGM-------ATK 133

Query: 115 XXXXXXXXXXXXXTAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKG 174
                        T F++KL +F+AASKIKVIKEVR FT LGLKEAKD+VEK P+++KKG
Sbjct: 134 TTTAAQEEVKPEKTVFELKLLSFEAASKIKVIKEVRGFTDLGLKEAKDIVEKTPSIIKKG 193

Query: 175 VTKEEAEAIIAKLKDVGAKASME 197
           V+KEE E II K+K +GA   +E
Sbjct: 194 VSKEEGEQIIEKMKALGANVVLE 216


>Medtr2g064300.3 | 50S ribosomal protein L7/L12 | HC |
           chr2:27242305-27240768 | 20130731
          Length = 216

 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 86/143 (60%), Gaps = 8/143 (5%)

Query: 56  EKVSAIVDELTGLTLLEVMDLVEVMREKKGINELPIAMLMVPG-MGIRGLPXXXXXXXXX 114
           E+V  +VDE+  LTL E  +L  ++ +K GI E+P    M  G   + G+          
Sbjct: 81  ERVFRLVDEVASLTLAEGAELGLILMKKMGIKEMPNVGYMKAGSANLAGM-------ATK 133

Query: 115 XXXXXXXXXXXXXTAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKG 174
                        T F++KL +F+AASKIKVIKEVR FT LGLKEAKD+VEK P+++KKG
Sbjct: 134 TTTAAQEEVKPEKTVFELKLLSFEAASKIKVIKEVRGFTDLGLKEAKDIVEKTPSIIKKG 193

Query: 175 VTKEEAEAIIAKLKDVGAKASME 197
           V+KEE E II K+K +GA   +E
Sbjct: 194 VSKEEGEQIIEKMKALGANVVLE 216


>Medtr2g031960.1 | 50S ribosomal protein L7/L12 | HC |
           chr2:12139698-12140512 | 20130731
          Length = 155

 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 84/157 (53%), Gaps = 16/157 (10%)

Query: 43  RSLFARNCSTATPEKVSAIVDELTGLTLLEVMDLVEVMREKKGINEL--PIAMLMVPGMG 100
           R+L       + PE+   I +EL  L   E  D   + R K G++    P+A        
Sbjct: 13  RTLSTEASPISKPER---IANELLTLNRFERHDFTILWRLKMGLDRYGSPVAA------- 62

Query: 101 IRGLPXXXXXXXXXXXXXXXXXXXXXXTAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEA 160
               P                      TAFD+KL+ +DAA+KIK+IKEVR+FT LGLK+A
Sbjct: 63  ----PGPLGPTSSGPTSGTTTAAAEEKTAFDIKLEKYDAAAKIKIIKEVRSFTDLGLKDA 118

Query: 161 KDLVEKVPTVLKKGVTKEEAEAIIAKLKDVGAKASME 197
           KDLVEK P VLKKGVTKEE  +II KLK++GA   +E
Sbjct: 119 KDLVEKAPCVLKKGVTKEEGGSIIDKLKELGATVVLE 155


>Medtr6g006060.1 | 50S ribosomal protein L7/L12 | HC |
           chr6:992343-991507 | 20130731
          Length = 181

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 16/145 (11%)

Query: 52  TATPEKVSAIVDELTGLTLLEVMDLVEVMREKKGINELPIAMLMVPGMGIRGLPXXXXXX 111
           +A   ++  + ++++ LTL +  DLV+ ++EK G+     A                   
Sbjct: 52  SAVATEIEKLGNDISDLTLSQAKDLVDYLQEKLGVTAASFAPAAA--------------- 96

Query: 112 XXXXXXXXXXXXXXXXTAFDVKLDAFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVL 171
                           T FDV ++   + ++I  IK VR  TSLGLKEAK+L+E +P   
Sbjct: 97  -AVAAPAAEAAVVEEKTEFDVVIEEVPSNARIAAIKAVRALTSLGLKEAKELIEGLPKKF 155

Query: 172 KKGVTKEEAEAIIAKLKDVGAKASM 196
           K+GV+K+EA+    +L+  GAK ++
Sbjct: 156 KEGVSKDEADDAKKQLEAAGAKVTI 180