Miyakogusa Predicted Gene

Lj4g3v0949910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0949910.1 tr|F2XX47|F2XX47_LITCN Succinate dehydrogenase
OS=Litchi chinensis PE=2
SV=1,87.18,0.00000000000009,Succ_DH_flav_C,Fumarate
reductase/succinate dehydrogenase flavoprotein-like,
C-terminal,CUFF.48212.1
         (39 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g020050.1 | succinate dehydrogenase [ubiquinone] flavoprot...    78   2e-15
Medtr5g020050.2 | succinate dehydrogenase [ubiquinone] flavoprot...    75   2e-14

>Medtr5g020050.1 | succinate dehydrogenase [ubiquinone] flavoprotein
           subunit | HC | chr5:7636353-7644053 | 20130731
          Length = 626

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/39 (82%), Positives = 35/39 (89%)

Query: 1   MKHTVGYWENEKVRLDYRPVHMNTLDDEAEPVPPFARVY 39
           MKHT+G+WENEKVRLDYRPVH+NTLDDE E  PP ARVY
Sbjct: 588 MKHTLGFWENEKVRLDYRPVHLNTLDDEVESFPPKARVY 626


>Medtr5g020050.2 | succinate dehydrogenase [ubiquinone] flavoprotein
           subunit | HC | chr5:7636353-7644043 | 20130731
          Length = 533

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/39 (82%), Positives = 35/39 (89%)

Query: 1   MKHTVGYWENEKVRLDYRPVHMNTLDDEAEPVPPFARVY 39
           MKHT+G+WENEKVRLDYRPVH+NTLDDE E  PP ARVY
Sbjct: 495 MKHTLGFWENEKVRLDYRPVHLNTLDDEVESFPPKARVY 533