Miyakogusa Predicted Gene

Lj4g3v0913480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0913480.1 tr|G7LFK4|G7LFK4_MEDTR V-type proton ATPase
subunit H OS=Medicago truncatula GN=MTR_8g078370 PE=4
SV,93.21,0,V-TYPE PROTON ATPASE SUBUNIT H,NULL; V-TYPE PROTON ATPASE
SUBUNIT H,ATPase, V1 complex, subunit H;
n,NODE_30654_length_1094_cov_283.676422.path2.1
         (163 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g078370.1 | vacuolar H+-ATPase subunit H, putative | HC | ...   319   9e-88

>Medtr8g078370.1 | vacuolar H+-ATPase subunit H, putative | HC |
           chr8:33396334-33390908 | 20130731
          Length = 486

 Score =  319 bits (817), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 152/163 (93%), Positives = 159/163 (97%)

Query: 1   MVDLQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGNLDWSP 60
           MVDLQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGNLDWSP
Sbjct: 324 MVDLQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGNLDWSP 383

Query: 61  MHKDLIFWRENVTNFEENDFQIVRVLITILDSSNDPRTLAVACFDLSQFVQYHPSGRIIV 120
           MHKD IFWREN+TNFEE+DFQI+RVL+TILDSSNDPRTLAVACFD+SQF+Q HP+GRIIV
Sbjct: 384 MHKDPIFWRENITNFEEHDFQILRVLLTILDSSNDPRTLAVACFDISQFIQSHPAGRIIV 443

Query: 121 ADLKAKERVMKLMNHESAEVTKNALLCIQRLFLGAKYASFLQA 163
            DLKAKERVMKLMNHESAEVTKNALLCIQRLFLGAKYASFLQ 
Sbjct: 444 TDLKAKERVMKLMNHESAEVTKNALLCIQRLFLGAKYASFLQV 486