Miyakogusa Predicted Gene

Lj4g3v0877650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0877650.1 tr|A9S0S4|A9S0S4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_122476,47.24,2e-18,WCOR413,Cold acclimation
WCOR413,gene.g53495.t1.1
         (136 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g078880.1 | cold-regulated 413 plasma membrane-like protei...   216   4e-57
Medtr4g068510.1 | cold acclimation protein WCOR413 | HC | chr4:2...   178   1e-45
Medtr4g068520.1 | cold acclimation protein WCOR413 | HC | chr4:2...   177   2e-45
Medtr1g034340.1 | cold acclimation protein WCOR413 | HC | chr1:1...   170   4e-43
Medtr1g034350.1 | cold acclimation protein WCOR413 | LC | chr1:1...   159   7e-40
Medtr8g088110.1 | cold acclimation protein WCOR413 | HC | chr8:3...    61   2e-10

>Medtr8g078880.1 | cold-regulated 413 plasma membrane-like protein |
           HC | chr8:33618320-33617207 | 20130731
          Length = 202

 Score =  216 bits (551), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 101/123 (82%), Positives = 115/123 (93%)

Query: 1   MLTSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLT 60
           MLTSLLVPYIFFSFP SL++F RG VGKW AF+AVVLRLFF+++FPD LE+PGS++LLLT
Sbjct: 75  MLTSLLVPYIFFSFPESLYNFFRGGVGKWFAFVAVVLRLFFNKHFPDWLELPGSIVLLLT 134

Query: 61  VAPDLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVY 120
           V PDLFA +FRNNW+GVAIDLFIGCYLLQEHIRATGGFRNSFTQ+HGISNTLGI+ LIVY
Sbjct: 135 VTPDLFAIKFRNNWIGVAIDLFIGCYLLQEHIRATGGFRNSFTQRHGISNTLGIIFLIVY 194

Query: 121 PVW 123
           P+W
Sbjct: 195 PIW 197


>Medtr4g068510.1 | cold acclimation protein WCOR413 | HC |
           chr4:25742635-25744856 | 20130731
          Length = 199

 Score =  178 bits (451), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 105/123 (85%)

Query: 1   MLTSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLT 60
           +LTSLL+PYIFFS P  +F+ +RGE+GKWIA +AVVLRLF  ++FPD LE+PG++ILL+ 
Sbjct: 70  ILTSLLIPYIFFSLPSFVFNVIRGEIGKWIALVAVVLRLFIPKHFPDWLELPGALILLIV 129

Query: 61  VAPDLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVY 120
           V+PDL A  FRN+ VGV + L I CYLLQEHIRA+GGFRNSFT+ +G+SN++GI+LL+VY
Sbjct: 130 VSPDLVASTFRNDLVGVIVCLVIACYLLQEHIRASGGFRNSFTRANGVSNSIGIILLLVY 189

Query: 121 PVW 123
           P+W
Sbjct: 190 PIW 192


>Medtr4g068520.1 | cold acclimation protein WCOR413 | HC |
           chr4:25738963-25741682 | 20130731
          Length = 198

 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 105/123 (85%)

Query: 1   MLTSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLT 60
           +LTSLL+PYIFFS P  +F+ +RGE+GKWIA +AVVLRLF  ++FPD LE+PG++ILL+ 
Sbjct: 69  ILTSLLIPYIFFSLPSFVFNVIRGEIGKWIALVAVVLRLFIPKHFPDWLELPGALILLIV 128

Query: 61  VAPDLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVY 120
           V+PDL A  FRN+ VG+ + L I CYLLQEHIRA+GGFRNSFT+ +G+SN++GI+LL+VY
Sbjct: 129 VSPDLVASTFRNDLVGIIVCLVIACYLLQEHIRASGGFRNSFTKANGVSNSVGIILLLVY 188

Query: 121 PVW 123
           PVW
Sbjct: 189 PVW 191


>Medtr1g034340.1 | cold acclimation protein WCOR413 | HC |
           chr1:12509041-12510983 | 20130731
          Length = 195

 Score =  170 bits (430), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 78/122 (63%), Positives = 100/122 (81%), Gaps = 1/122 (0%)

Query: 3   TSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLTVA 62
           TSLL+PYIF S P  +F   R E+G+WIA IAVVLRLFF R+FPD LE+P ++ILL+ VA
Sbjct: 66  TSLLIPYIFLSLPSWIFSIFRAEIGRWIALIAVVLRLFFPRHFPDWLELPAALILLIVVA 125

Query: 63  PDLFAQRFRNNWV-GVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVYP 121
           PDLFA  FR++ V GV + L I CYLLQEHIRA+GGFR+SFT+ +G+SNT+GI+LL++YP
Sbjct: 126 PDLFANTFRSDAVGGVVVCLIIACYLLQEHIRASGGFRDSFTKAYGMSNTIGIILLLIYP 185

Query: 122 VW 123
           +W
Sbjct: 186 IW 187


>Medtr1g034350.1 | cold acclimation protein WCOR413 | LC |
           chr1:12511398-12514859 | 20130731
          Length = 254

 Score =  159 bits (402), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 75/115 (65%), Positives = 91/115 (79%)

Query: 3   TSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLTVA 62
           TSLLVPYIFFS P  +F   R E+G+WIA IAVVLRLF  R FPD LE+P ++ILL+ VA
Sbjct: 127 TSLLVPYIFFSLPSWIFGVFRAEIGRWIALIAVVLRLFVSRRFPDRLELPAALILLIVVA 186

Query: 63  PDLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLL 117
           PDLFA  FR++ VG+ + L I CYLLQE IRA+GGFR+S T+ HGISNT+GI+LL
Sbjct: 187 PDLFANTFRSDEVGLVVCLVIACYLLQEQIRASGGFRDSLTKAHGISNTIGIILL 241


>Medtr8g088110.1 | cold acclimation protein WCOR413 | HC |
           chr8:36484737-36487392 | 20130731
          Length = 234

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 10/122 (8%)

Query: 4   SLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLTVAP 63
           S +VP      P  +F +++G  G W AF+A+++RLFFH   P  LE+P    LL+ VAP
Sbjct: 117 SFIVPLFALQAPAPVFSWIQGRYGVWSAFLALLVRLFFH--IPGELELPFIAFLLVIVAP 174

Query: 64  DLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISN------TLGILLL 117
              A R R+   G  I L I  YL  +H   T     SF Q   +S       T+  LLL
Sbjct: 175 HE-AVRLRDTKEGAVISLLIAVYLAFQHFSRT-SLEKSFDQGSVVSTLAVIGITVASLLL 232

Query: 118 IV 119
           ++
Sbjct: 233 LI 234