Miyakogusa Predicted Gene

Lj4g3v0816850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0816850.1 Non Characterized Hit- tr|D7L1U6|D7L1U6_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,70,2e-19,PROTEIN RER1,Retrieval of early ER protein Rer1;
Rer1,Retrieval of early ER protein
Rer1,NODE_58446_length_239_cov_286.460266.path2.1
         (65 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g094930.1 | ATRER1A | HC | chr4:39306869-39304054 | 20130731    124   1e-29
Medtr5g016560.1 | ATRER1A | HC | chr5:5950897-5953021 | 20130731      103   4e-23
Medtr4g070400.1 | ATRER1A | HC | chr4:26526416-26523268 | 20130731     91   4e-19
Medtr4g070400.2 | ATRER1A | HC | chr4:26526185-26523282 | 20130731     91   4e-19
Medtr5g016560.2 | ATRER1A | HC | chr5:5950897-5952565 | 20130731       89   7e-19

>Medtr4g094930.1 | ATRER1A | HC | chr4:39306869-39304054 | 20130731
          Length = 192

 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 59/65 (90%), Positives = 62/65 (95%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKRASAEST 60
           MTFFSAFDVPVFWPILLFYWV LFTLTMRRQIAHMI+YKYVPFSFGK RYD KRASAEST
Sbjct: 128 MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIAHMIKYKYVPFSFGKQRYDRKRASAEST 187

Query: 61  TLSDD 65
           +LSD+
Sbjct: 188 SLSDN 192


>Medtr5g016560.1 | ATRER1A | HC | chr5:5950897-5953021 | 20130731
          Length = 208

 Score =  103 bits (256), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 53/61 (86%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKRASAEST 60
           MTF SAFD+PVFWPILLFYWV LF+LTMRRQI+HMI+Y+YVPF+FGK  Y  KRAS E +
Sbjct: 143 MTFSSAFDIPVFWPILLFYWVVLFSLTMRRQISHMIKYRYVPFNFGKQHYQRKRASEEES 202

Query: 61  T 61
           T
Sbjct: 203 T 203


>Medtr4g070400.1 | ATRER1A | HC | chr4:26526416-26523268 | 20130731
          Length = 197

 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/51 (78%), Positives = 44/51 (86%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYD 51
           MTFFS FDVPVFWPILL YWV LF LTMRRQIAHMI+Y+Y+PFS GK +Y 
Sbjct: 132 MTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKYRYIPFSLGKQKYG 182


>Medtr4g070400.2 | ATRER1A | HC | chr4:26526185-26523282 | 20130731
          Length = 197

 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/51 (78%), Positives = 44/51 (86%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYD 51
           MTFFS FDVPVFWPILL YWV LF LTMRRQIAHMI+Y+Y+PFS GK +Y 
Sbjct: 132 MTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKYRYIPFSLGKQKYG 182


>Medtr5g016560.2 | ATRER1A | HC | chr5:5950897-5952565 | 20130731
          Length = 192

 Score = 89.4 bits (220), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 45/47 (95%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGK 47
           MTF SAFD+PVFWPILLFYWV LF+LTMRRQI+HMI+Y+YVPF+FGK
Sbjct: 143 MTFSSAFDIPVFWPILLFYWVVLFSLTMRRQISHMIKYRYVPFNFGK 189