Miyakogusa Predicted Gene

Lj4g3v0804500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0804500.1 Non Characterized Hit- tr|I1K283|I1K283_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,72.92,0.00000002,
,NODE_45623_length_1178_cov_19.471138.path2.1
         (47 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g094988.1 | chromatin-binding protein | HC | chr4:39447669...    48   2e-06

>Medtr4g094988.1 | chromatin-binding protein | HC |
          chr4:39447669-39441563 | 20130731
          Length = 319

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 33/48 (68%), Gaps = 3/48 (6%)

Query: 1  MGNSSKD-DSATSGDASAGDGDVQPSKPPIYTEGEKVLAHHVSRFYEA 47
          MGNSSKD DSA SGD  +GD  V  S   +Y+ GEKVLA+H  R YEA
Sbjct: 1  MGNSSKDADSANSGDGPSGD--VPSSDSRVYSAGEKVLAYHGPRIYEA 46