Miyakogusa Predicted Gene

Lj4g3v0772150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0772150.1 Non Characterized Hit- tr|I1MVQ3|I1MVQ3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.28984
PE,81.99,0,TETRATRICOPEPTIDE REPEAT PROTEIN, TPR,NULL,CUFF.48038.1
         (372 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g016190.1 | suppressor of RPS4-RLD 1/TPR domain protein | ...   611   e-175
Medtr5g016190.2 | suppressor of RPS4-RLD 1/TPR domain protein | ...   168   1e-41

>Medtr5g016190.1 | suppressor of RPS4-RLD 1/TPR domain protein | HC |
            chr5:5750880-5763864 | 20130731
          Length = 1033

 Score =  611 bits (1576), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 286/374 (76%), Positives = 324/374 (86%), Gaps = 3/374 (0%)

Query: 1    MAGLAAIEIAQKVSKAWRSLHAEWKYSK---GNSKNGKRAKRRERINRPSQNRGGVGCST 57
            M+G AAIE+AQKVSK WR L AEWK S     NSK+GKR +RRERIN PSQNRGG GCST
Sbjct: 660  MSGFAAIEVAQKVSKIWRILQAEWKSSNKPNSNSKHGKRVRRRERINLPSQNRGGAGCST 719

Query: 58   SSTLETSLHGTVDDRSSSCTMSWQDVYSLAVRWRQISEPCDPVMWVNKLSKDLNSGIGSH 117
            SS  ETS  G VDD+ SS  MSW+D+YS+AVRWRQISEPCDPV+WVNKLS++ NSG GSH
Sbjct: 720  SSVFETSSSGIVDDKLSSRHMSWKDIYSIAVRWRQISEPCDPVVWVNKLSEEFNSGFGSH 779

Query: 118  TPMILGQAKVVRYFPNYERTLDLAKTVMKERSFVYSNTDEMINLSKDGKLEQVMLAKSCS 177
            TPMILGQAKVVRYFPNYERTLD+AKTVMKERS+V+  TD++I+LS DGKLE++M AKSCS
Sbjct: 780  TPMILGQAKVVRYFPNYERTLDIAKTVMKERSYVHGKTDQIIHLSNDGKLEEIMHAKSCS 839

Query: 178  DLYRVIGEDFWLATSCNSTAFEGKQLEGTRITLEKKGEHGFDFAIRTPCTSARWEDFDAE 237
            DLY+V+GEDFW +T CNSTAFEGKQLEGTR+TL K G+HGFDFAIRTPCT ARWED+DAE
Sbjct: 840  DLYKVVGEDFWSSTWCNSTAFEGKQLEGTRVTLVKMGQHGFDFAIRTPCTPARWEDYDAE 899

Query: 238  MEVAWETLCSAYCGENYGSTDFNVLEDVRNAILRMTYYWYNFRPLYKGSAAVGFVVMQGL 297
            M +AWE LC+AYCGENYGSTDF+VLE+VR+AILRMTYYWYNF PL +G+AAVGF VM GL
Sbjct: 900  MAMAWEALCNAYCGENYGSTDFDVLENVRDAILRMTYYWYNFMPLSRGTAAVGFAVMLGL 959

Query: 298  LLAANMEFTGSIPQGLQVDLEAILSSDTNSFVDSVETWLYPSLKLTTLWKGYPDIVSTFE 357
            LLAANMEFTGSIPQG QVD EAIL+ D NSFVDSV++WLYPSLK+TT WK Y D+ STF 
Sbjct: 960  LLAANMEFTGSIPQGFQVDWEAILNLDPNSFVDSVKSWLYPSLKVTTSWKDYHDVASTFA 1019

Query: 358  TIGSVVAALSFSDD 371
            T GSVVAALS  D+
Sbjct: 1020 TTGSVVAALSSYDE 1033


>Medtr5g016190.2 | suppressor of RPS4-RLD 1/TPR domain protein | HC
           | chr5:5750880-5761129 | 20130731
          Length = 777

 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/110 (72%), Positives = 89/110 (80%), Gaps = 3/110 (2%)

Query: 1   MAGLAAIEIAQKVSKAWRSLHAEWKYSK---GNSKNGKRAKRRERINRPSQNRGGVGCST 57
           M+G AAIE+AQKVSK WR L AEWK S     NSK+GKR +RRERIN PSQNRGG GCST
Sbjct: 660 MSGFAAIEVAQKVSKIWRILQAEWKSSNKPNSNSKHGKRVRRRERINLPSQNRGGAGCST 719

Query: 58  SSTLETSLHGTVDDRSSSCTMSWQDVYSLAVRWRQISEPCDPVMWVNKLS 107
           SS  ETS  G VDD+ SS  MSW+D+YS+AVRWRQISEPCDPV+WVNKLS
Sbjct: 720 SSVFETSSSGIVDDKLSSRHMSWKDIYSIAVRWRQISEPCDPVVWVNKLS 769