Miyakogusa Predicted Gene

Lj4g3v0771140.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0771140.1 Non Characterized Hit- tr|Q2QZQ1|Q2QZQ1_ORYSJ
Retrotransposon protein, putative, Ty3-gypsy subclass
,31.88,0.00000000000002,POPLD,POPLD,CUFF.48051.1
         (392 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g008840.1 | ribonuclease P | HC | chr4:1706291-1713206 | 2...   510   e-144

>Medtr4g008840.1 | ribonuclease P | HC | chr4:1706291-1713206 |
           20130731
          Length = 863

 Score =  510 bits (1313), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/352 (71%), Positives = 282/352 (80%), Gaps = 1/352 (0%)

Query: 41  WSIILPLSWVKAFWIPLISNGAHAIGLREKHWIACEIELPSFHSDFPDCKAYSCEMAAKD 100
           WSIILPLSWVKAFWIPL+SNGAHAIGLREK WIA +  +P F  DFPDCKAYS  MAAK 
Sbjct: 513 WSIILPLSWVKAFWIPLVSNGAHAIGLREKQWIASDTGIPFFPQDFPDCKAYSRFMAAKA 572

Query: 101 AVFNKKEELRQPSVRHFKVPIVPPWGIVRTTFNKEISAMDTLDLSTREDLTSANSLPISF 160
           A  ++KEEL  PSVR+ +VPI+PPW IV  TFNKEIS M+TLDLS REDLT+ANSL  S 
Sbjct: 573 AECDQKEELCPPSVRNLRVPILPPWRIVHNTFNKEISNMETLDLSAREDLTNANSLSNSC 632

Query: 161 SGSSKISNFNCMNNSFDGTIARTGNMLTTFINETKAGQLLLFPHVAEGKDIISKFIKGEQ 220
            G+SKISNF+   N+FDGT+ARTG MLTT ++ETK G+LLLFP+ A+GK  ISKFIKGE 
Sbjct: 633 PGNSKISNFDS-ENAFDGTVARTGCMLTTLLDETKTGRLLLFPYAADGKARISKFIKGEI 691

Query: 221 NLDLMHKSSVIYDHKLCFLRVILHPFKEGFFEEGAVICAPCLSDISMWTXXXXXXXXXXX 280
            LD  HKSS+IYD KL F+RV L PFKEGFFEEGAVICAP  SDIS+WT           
Sbjct: 692 MLDTRHKSSIIYDRKLYFIRVHLQPFKEGFFEEGAVICAPHPSDISLWTLSSVKSEVGLK 751

Query: 281 XXXXAMKLYFKEHSSGKWGMQIPEDSIARASHRWPIGFVTTASVQGSKRLVAEGFCEAVL 340
               AM+ YFKE+SSG+WGMQIP+DS+ R SHRWPIGFVT+A VQGSKRL AEGFCEAVL
Sbjct: 752 LSESAMRSYFKENSSGEWGMQIPDDSVGRESHRWPIGFVTSACVQGSKRLAAEGFCEAVL 811

Query: 341 LSHLREEQWKEMPVKQRRREIYVLVWNLRSVAYRLALASVVLENQKTDVEFF 392
           LSHLREEQWKEMPV QRR EIY+LV NLRSVAYRLALAS+VLE Q+ D EF 
Sbjct: 812 LSHLREEQWKEMPVNQRRSEIYILVRNLRSVAYRLALASIVLEYQQNDTEFL 863