Miyakogusa Predicted Gene

Lj4g3v0768700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0768700.1 tr|Q8S3Q2|Q8S3Q2_ORYSJ OSJNBa0011F23.5 protein
OS=Oryza sativa subsp. japonica GN=24K23.4 PE=4
SV=1,28.04,7e-19,SAGA-Tad1,Transcriptional coactivator SAGA-type
complex, Ada1/Tada1; SUBFAMILY NOT NAMED,NULL; FAMIL,CUFF.48018.1
         (307 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g095490.1 | transcriptional regulator of RNA polII, SAGA, ...   207   7e-54
Medtr1g106765.1 | transcriptional regulator of RNA polII, SAGA, ...   168   7e-42
Medtr1g009710.1 | transcriptional regulator of RNA polII, SAGA, ...   144   7e-35
Medtr1g009690.1 | transcriptional regulator of RNA polII, SAGA, ...   136   3e-32

>Medtr4g095490.1 | transcriptional regulator of RNA polII, SAGA,
           subunit | LC | chr4:39817649-39814422 | 20130731
          Length = 455

 Score =  207 bits (528), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 104/156 (66%), Positives = 123/156 (78%), Gaps = 5/156 (3%)

Query: 1   MPAARYFSPVDTLEQKLQIERKLGTVKACKYFNLLTRFLSVKISKHEFDRQCRATIGREN 60
           MPAARYF P++TLEQKLQI+R+LG V++CKYFNLL+ FLS+KI+K +FDR C ATIGREN
Sbjct: 1   MPAARYFPPINTLEQKLQIQRRLGGVRSCKYFNLLSSFLSLKIAKTDFDRICIATIGREN 60

Query: 61  IHLHNHFIRSILKKASLSK----RGNIIGSSLNVKIPNGCNDLQFLCKDFLQSPRKVRTP 116
           I LHNHF++SILKKASL K    R N + + LNVK PNGCN LQ LCK+  QSPRK RTP
Sbjct: 61  ITLHNHFLKSILKKASLPKTALPRQNSVQAPLNVKTPNGCNSLQPLCKNLPQSPRKCRTP 120

Query: 117 SLRDRRFKDRPSPLGPNGKNVNIGFEDSVREIHEQQ 152
           +LRDRRF+ RP PL P  KN NIGFE+S  +  E Q
Sbjct: 121 NLRDRRFRGRP-PLAPLRKNNNIGFENSTPKTQEPQ 155



 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/174 (59%), Positives = 124/174 (71%), Gaps = 14/174 (8%)

Query: 147 EIHEQQSNKELDSAASRIPLCVEDGEEVDQDSEKVNIYMRSPIQPPLAIPTYNKGTRTLL 206
           +I EQQ + +  SA  R P+ VE G+EVD+DSE++ I +RSPI+ PLA+PTY    + L 
Sbjct: 262 KIQEQQRDTDPLSAGKRFPVSVEYGKEVDRDSERLAI-IRSPIRAPLALPTYGNRAQRLA 320

Query: 207 HNGLPSG--TDTCQSIGELPDTPSLTKRLEQKLEMEGFKISADAAALMNKALDTYLKRLI 264
           HNGLPSG  T+TC+SI  LPDT SL KRLE  LE EG  ISADAA ++NKALD YLKRLI
Sbjct: 321 HNGLPSGIVTNTCESISYLPDTHSLMKRLEHNLETEGCNISADAANVLNKALDVYLKRLI 380

Query: 265 KPCLDLAASKAVNRSNGPIQPGLN---------EQIG--SVSVSDFRTATELNP 307
           KPCLDLAASK VN+ +G IQPG+N         + IG  S S+SDFR A ELNP
Sbjct: 381 KPCLDLAASKPVNKFSGHIQPGMNYLPQNRSVQQLIGSASASISDFRAAMELNP 434


>Medtr1g106765.1 | transcriptional regulator of RNA polII, SAGA,
           subunit | HC | chr1:48303372-48305404 | 20130731
          Length = 358

 Score =  168 bits (425), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 119/330 (36%), Positives = 172/330 (52%), Gaps = 29/330 (8%)

Query: 7   FSPVDTLEQKLQIERKLGTVKACKYFNLLTRFLSVKISKHEFDRQCRATIGRENIHLHNH 66
           ++ ++TLE K  I +K+G  +A  YF+ L + +S KISK EFD+ C  TIG+EN+ LHN 
Sbjct: 8   YTRINTLELKAVIVKKVGNQRAGTYFDQLGKLVSSKISKAEFDKICITTIGKENVPLHNQ 67

Query: 67  FIRSILKKASLSKRGNIIGSSLNVKIPNGCNDLQFLCKDFLQSPRKVRTPSLR------- 119
            IR+ILK   LSK      S+   ++ N  +  +   +           PSLR       
Sbjct: 68  LIRAILKNVCLSKVPPHRSSAKKERVLNAKDSNRQQSRSIQMQYGDAFPPSLRRGGSLAT 127

Query: 120 -DRRFKDRPSPLGPNGKNVNIGFEDSVREIHEQQSNKELDSAASRIPLCVEDGEEVDQ-- 176
            +     R S LG  GK  N+G +D + +  EQQS  EL+S  SR P+ VEDGEEV+Q  
Sbjct: 128 CEGMLTGRQSALGQLGKPRNLGSKDLIYKTPEQQSATELNSLGSRPPISVEDGEEVEQLG 187

Query: 177 DSEKVNIYMRSPIQPPLAIPT---YNKGTRTLLHNGLPSGTDTCQSIGELPDTPSLTKRL 233
            S   +I  +SP+  PL +     Y +   ++  +      +TC S G LPDT SL  RL
Sbjct: 188 GSPSPSIQSKSPVAAPLGVSMNSGYGRSPLSIASSCRKHPRETCFSNGYLPDTSSLRSRL 247

Query: 234 EQKLEMEGFKISADAAALMNKALDTYLKRLIKPCLDLAA-----SKAVNRSNGP------ 282
           EQKL+ EG  ++ D   L+N A+D+YLKRL++    L++     ++   + NG       
Sbjct: 248 EQKLKKEGLTVTVDCVNLLNNAMDSYLKRLVESSTGLSSGLRFGNEHRRQGNGQSIADSN 307

Query: 283 -IQPGLNEQIGS----VSVSDFRTATELNP 307
            +QP    Q  +     S+ DFR A ELNP
Sbjct: 308 ILQPRRYMQTATQSSCASLLDFRVAMELNP 337


>Medtr1g009710.1 | transcriptional regulator of RNA polII, SAGA,
           subunit | HC | chr1:1448833-1451707 | 20130731
          Length = 420

 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 180/396 (45%), Gaps = 99/396 (25%)

Query: 8   SPVDTLEQKLQIERKLGTVKACKYFNLLTRFLSVKISKHEFDRQCRATIGRENIHLHNHF 67
           S +D  E K+QI +K+G  K+ +YF  L RFLS K+SK EFD+ C   +GREN+ LHNHF
Sbjct: 7   SRIDLGELKVQIVKKIGPDKSKRYFYYLNRFLSQKLSKSEFDKLCFRVLGRENLPLHNHF 66

Query: 68  IRSILKKASLSKRGNII--------GSSLNVKIPNGCNDLQFLCKDFLQ----------- 108
           I+SILK A  +K    +        G+ +    P G +  +     F             
Sbjct: 67  IKSILKNALQAKTPPTVHPSDSSKSGARVTNLSPGGEDGHEQSAASFQNHNASIWTNGVL 126

Query: 109 --SPRKVRTPSLRDRRFKDRPSPLGPNGKNVNIGF-----EDSVREIH---------EQQ 152
             SPRK+R+  +RDR+ KDRPSPLGPNGK  ++       EDS  ++          + Q
Sbjct: 127 PVSPRKLRS-GMRDRKLKDRPSPLGPNGKVDSVAHQYTATEDSGSKVDMENGTLTPCDYQ 185

Query: 153 SNKELDSAASRIP-------------------------LCVEDGEEVDQDSEKVNIYMRS 187
              +     S +P                           VEDGEE +Q   ++N + R+
Sbjct: 186 RPTQHLQVVSELPEIVMGDGMQGISENQRIRGKGLTERSTVEDGEEAEQ-LNRLN-FARN 243

Query: 188 PIQPPLAIPTYNK---GTRTLLHNGLPSGTDTCQSIGELPDTPSLTKRLEQKLEMEGF-K 243
           P+  PL IP  +    G R  L         +C   G L DT +L +R+EQ   ++G   
Sbjct: 244 PLIAPLGIPYCSASVGGARKALPVNSAGDFVSCSDSGRLSDTDTLRRRMEQIAMVQGLGG 303

Query: 244 ISADAAALMNKALDTYLKRLIKPCLDLAASKAVNRS-------NGPIQPG---------- 286
           +S + A+++N  LD YLKRLIK  +DL  +++ N         + P  PG          
Sbjct: 304 VSPECASVLNSVLDVYLKRLIKSSVDLVGARSANEPTTTKFPVSKPQIPGKLINGMLPNH 363

Query: 287 -LNEQIG--------------SVSVSDFRTATELNP 307
            L+ Q                SVS+ DF+ A ELNP
Sbjct: 364 HLHVQSAGRLAESEPEHRSQFSVSLHDFKVAMELNP 399


>Medtr1g009690.1 | transcriptional regulator of RNA polII, SAGA,
           subunit | HC | chr1:1441169-1438514 | 20130731
          Length = 420

 Score =  136 bits (342), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 123/398 (30%), Positives = 184/398 (46%), Gaps = 103/398 (25%)

Query: 8   SPVDTLEQKLQIERKLGTVKACKYFNLLTRFLSVKISKHEFDRQCRATIGRENIHLHNHF 67
           S ++ +E K+QI +++G  K+ +YF  L RFLS K+SK+EFD+ C   +GREN+ LHN+F
Sbjct: 7   SRINLVELKVQIVKRIGVEKSKRYFYYLNRFLSHKLSKNEFDKLCFRVLGRENLPLHNYF 66

Query: 68  IRSILKKASLSKRGNIIG----SSLNVKIPN---GCND--LQFLCKDFLQ---------- 108
           I+SI K A  +K   ++     S    ++ N   G  D   Q +     Q          
Sbjct: 67  IKSIFKNACQAKTPPLVQPSGPSKSGARVTNFSPGVEDGHEQSVANGNFQNHNVSVWSNG 126

Query: 109 ----SPRKVRTPSLRDRRFKDRPSPLGPNGK-----NVNIGFEDSVREI----------H 149
               SPR +R+  +RDR+ KDRPSPLGPNGK     + ++  EDS  ++           
Sbjct: 127 VLPVSPRMLRS-GIRDRKLKDRPSPLGPNGKVDSVAHHSMASEDSGSKVDMENGTLTPCD 185

Query: 150 EQQSNKELDSAASRIP-------------------------LCVEDGEEVDQDSEKVNIY 184
            Q+  + L   A  +P                           VEDGEEV+Q +     +
Sbjct: 186 YQRRTQHLQEVAG-LPKNAMGDAILGLAEKPRTHVNGLTQISTVEDGEEVEQLNRLG--F 242

Query: 185 MRSPIQPPLAIPTYNKGTRTLLHNGLPSGTD----TCQSIGELPDTPSLTKRLEQKLEME 240
            R+P+  PL IP Y   +       LP+ +     +C   G L DT +L +R+EQ   ++
Sbjct: 243 NRNPLIAPLGIP-YCSASVGGARKALPANSTGDFVSCCDSGRLSDTDTLRRRMEQIAMVQ 301

Query: 241 GF-KISADAAALMNKALDTYLKRLIKPCLDLAASKAVNRS---------------NGPI- 283
           G   +S + A ++N  LD YLKRLIK  +DL  +++ N                 NG + 
Sbjct: 302 GLVGVSPECATVLNSVLDVYLKRLIKSSVDLVGTRSTNEPTKLPISKQQVQEKLINGMLP 361

Query: 284 -------------QPGLNEQIG-SVSVSDFRTATELNP 307
                        +P L  +   SVS+ DF+ A ELNP
Sbjct: 362 NNHLHVHNTGRMAEPQLEHRPQFSVSLHDFKVAMELNP 399