Miyakogusa Predicted Gene

Lj4g3v0720730.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0720730.1 tr|B9IBM8|B9IBM8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_571999 PE=4
SV=1,78.85,5e-17,seg,NULL,CUFF.47959.1
         (111 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g097500.1 | thioredoxin-like protein | HC | chr4:40173229-...   106   5e-24

>Medtr4g097500.1 | thioredoxin-like protein | HC |
           chr4:40173229-40178424 | 20130731
          Length = 251

 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 68/110 (61%), Gaps = 4/110 (3%)

Query: 1   MAATLQSLRPPFRFHXXXXXXXXXXXXXXXXXFSSSKLMRSKGSVFFTRKRTDASVVRAS 60
           MA TLQSLR  F FH                 ++      +   +    KR  +S  RA 
Sbjct: 1   MATTLQSLR--FPFHPSITPPNSHTYPSSTVHYTPKSNTFNSSFIATRNKRLLSS--RAL 56

Query: 61  NSEYSPSITENLGDVSIFTAAGQPVMFKDLWDQNQGVAVVALLRHFGCPC 110
           NSEYSP++ ENLGDVSIFTAAG+ V+FKDLWDQ QG+AVVALLRHFGCPC
Sbjct: 57  NSEYSPTVAENLGDVSIFTAAGESVLFKDLWDQEQGIAVVALLRHFGCPC 106