Miyakogusa Predicted Gene

Lj4g3v0685290.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0685290.2 tr|A9SF97|A9SF97_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_233181,49.54,3e-17,CYTOCHROME C OXIDASE POLYPEPTIDE
VIA,Cytochrome c oxidase, subunit VIa; COX6A,Cytochrome c oxidase,
,CUFF.48307.2
         (102 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g097800.1 | cytochrome C oxidase | HC | chr4:40373795-4037...   120   3e-28

>Medtr4g097800.1 | cytochrome C oxidase | HC |
           chr4:40373795-40370401 | 20130731
          Length = 103

 Score =  120 bits (301), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 1   MASALVRSXXXXXXXXXXXXXXXXXPKRNFSSSGGH-DDAYETAKWEKITYLGIASCTAL 59
           MA+ L+RS                 PKRNFSSS GH DDAYETAKWEKITYLGI SCT L
Sbjct: 1   MATTLMRSGFIRNVLRRGGSGASPAPKRNFSSSSGHHDDAYETAKWEKITYLGIVSCTGL 60

Query: 60  AAYCLSKGXXXXXXXXXXXXLHIRNKEFPWGPDGLFETKHEHH 102
           A Y LSKG            LHIRNKEFPWGPDGLFE K EHH
Sbjct: 61  AVYILSKGHHHYDEPPAYPYLHIRNKEFPWGPDGLFEIKEEHH 103