Miyakogusa Predicted Gene
- Lj4g3v0684050.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0684050.1 Non Characterized Hit- tr|K4BY03|K4BY03_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,32.92,2e-18,seg,NULL,CUFF.47954.1
(328 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g082550.1 | transmembrane protein, putative | HC | chr4:32... 267 1e-71
Medtr4g082355.1 | transmembrane protein, putative | LC | chr4:32... 78 1e-14
Medtr4g082360.1 | transmembrane protein, putative | LC | chr4:32... 67 3e-11
Medtr4g082365.1 | transmembrane protein, putative | LC | chr4:32... 60 4e-09
Medtr3g088975.1 | transmembrane protein, putative | HC | chr3:40... 50 3e-06
>Medtr4g082550.1 | transmembrane protein, putative | HC |
chr4:32092252-32093271 | 20130731
Length = 339
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 156/335 (46%), Positives = 181/335 (54%), Gaps = 23/335 (6%)
Query: 11 NLSLWSILSESKRIINAHSRHFLALSVVFLLPISFSLV----IXXXXXXXXXXXQIHILL 66
+L LWSILSESKRIINAHSRHFLALSV+FLLP+SFSL+ I IHILL
Sbjct: 9 SLKLWSILSESKRIINAHSRHFLALSVIFLLPLSFSLIVSPTIFHLLSTPSNSPTIHILL 68
Query: 67 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAT-----------ATITHSVFH 115
R ATITHSVFH
Sbjct: 69 RQATSLLSLQLRTEEDIRFTPKTTTSLDLPLPLPLLLLPLFFLFFLSLCSLATITHSVFH 128
Query: 116 GFFGRPVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFSSSSHIXX 175
GFFGRPVK S S I
Sbjct: 129 GFFGRPVKLLSTVTSLLSSFLPLLTTTILSHLILFTISLPIPLLRLSF-----SFSEIIR 183
Query: 176 XXXXXXXXXXXXXXIYLRISWILAPVIAVVESSWGLEPLRRSAALMKGMKGVGAASFLFF 235
Y+RISW L+ VIA+VE+++G++PLRRSA LM GMK GA+ F FF
Sbjct: 184 TVSAILVLALSLLIFYIRISWTLSSVIAIVENTYGIQPLRRSAHLMNGMKYTGASCFFFF 243
Query: 236 SVAQGIVLWTGSLLT---VDSGAWRDWAFVLQIVLASTVLMLLMLYSTAANTVLYMYCKA 292
+ +GI+LW+G LL DSG+WRDWAF++QIVL S V+ +LMLY+ AANTVLYMYCKA
Sbjct: 244 ASLEGIMLWSGFLLARVVSDSGSWRDWAFMVQIVLTSAVMTVLMLYNAAANTVLYMYCKA 303
Query: 293 VHGELASEIAEEFAWQYVCLPFDDGKVPHVVSVLH 327
+HGELA EI EEFAWQYV LPFDDGKVPHVVSV+H
Sbjct: 304 LHGELAEEIVEEFAWQYVSLPFDDGKVPHVVSVVH 338
>Medtr4g082355.1 | transmembrane protein, putative | LC |
chr4:32079611-32080820 | 20130731
Length = 285
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 13/115 (11%)
Query: 191 YLRISWILAPVIAVVESSWGLEPLRRSAALMKGMKGVGAASFLFFSVAQGIVLWTGSLLT 250
YL ++ +I VVESSWG EPLRRS L+KGMK + ++ L F + I+L
Sbjct: 172 YLLVNLSFMKIIVVVESSWGFEPLRRSWKLVKGMKRLVLSTILLFGFLEVILLKISC--- 228
Query: 251 VDSGAWRDWAFVLQIVLASTVLMLLMLYSTAANTVLYMYCKAVHGELAS-EIAEE 304
++ VL +V+ S +L +LMLY+ NTVLY++CK HGE+A E E
Sbjct: 229 --------YSLVLVLVI-SPILAILMLYNIVVNTVLYIHCKEKHGEVADVEFGNE 274
>Medtr4g082360.1 | transmembrane protein, putative | LC |
chr4:32084257-32085405 | 20130731
Length = 281
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 61/105 (58%), Gaps = 12/105 (11%)
Query: 190 IYLRISWILAPVIAVVESSWGLEPLRRSAALMKGMKGVGAASFLFFSVAQGIVLWTGSLL 249
+YL ++ IL V+ VVESSWGLEPL+RS L+KGMK +G ++ F Q I+ W
Sbjct: 166 LYLEVNLILVRVVVVVESSWGLEPLKRSWKLVKGMKWLGFSTMFLFVSLQMILAW----- 220
Query: 250 TVDSGAWRDWAFVLQIVLASTVLMLLMLYSTAANTVLYMYCKAVH 294
+ S +W + I L S + +L +Y A T+LY+YCK H
Sbjct: 221 -ISSYSW------VLIFLVSPIAAVLSIYYIAVCTLLYIYCKEKH 258
>Medtr4g082365.1 | transmembrane protein, putative | LC |
chr4:32086719-32087813 | 20130731
Length = 259
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 191 YLRISWILAPVIAVVESSWGLEPLRRSAALMKGMKGVGAASFLFFSVAQGIVLWTGSLLT 250
YL ++ L VI VVESSWGLEPL+RS L+KGM+ + + F F + I+ W
Sbjct: 149 YLEVNLGLVKVIVVVESSWGLEPLKRSWKLVKGMRKLVLSIFYLFGFLEVILRWIS---- 204
Query: 251 VDSGAWRDWAFVLQIVLASTVLMLLMLYSTAANTVLYMYC 290
+ VL I + S + +LMLY+ A TV+Y Y
Sbjct: 205 -------GYNLVL-IFVISPIQAMLMLYNIAVFTVIYTYT 236
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 22/111 (19%)
Query: 13 SLWSILSESKRIINAHSRHFLALSVVFLLPISFSLVIXXXXXXXXXXXQIHILLRXXXXX 72
S+W++LSES IIN+ RH+L LS++FLLP SF ++I Q I++
Sbjct: 4 SIWNVLSESIHIINSQPRHYLTLSLIFLLPFSFLILISKLIIKHLQQQQPPIII------ 57
Query: 73 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATITHSVFHGFFGRPVK 123
A IT+SV++ FF +PVK
Sbjct: 58 ----------------SLYLLFLILSSIFSYSAFIAITYSVYNAFFNQPVK 92
>Medtr3g088975.1 | transmembrane protein, putative | HC |
chr3:40729182-40727803 | 20130731
Length = 332
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 190 IYLRISWILAPVIAVVESSWGLEPLRRSAALMKGMKGVGAASFL-----FFSVA---QGI 241
+YL I W LA V+ V+E S+G + + +S L+KG G+ FL FF + +
Sbjct: 193 LYLTIIWQLASVVTVLEDSYGFKAMMKSNNLIKGKIGLSTLIFLKLNVSFFGIQFLFTKL 252
Query: 242 VLWTGSLLTVDSGAWRDWAFVLQIVLASTVLMLLMLYSTAANTVLYMYCKAVHGE 296
V+ L VD A+ FVL L L L+ TVLY CK+ H +
Sbjct: 253 VVKAWGLTLVDRTAYGILCFVL--------LSHLFLFGLVIQTVLYFVCKSYHHQ 299