Miyakogusa Predicted Gene

Lj4g3v0668290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0668290.1 Non Characterized Hit- tr|K4A2Q9|K4A2Q9_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,63.27,0.000000002,NusB,NusB/RsmB/TIM44; no
description,NusB/RsmB/TIM44; NusB-like,NusB/RsmB/TIM44,CUFF.47852.1
         (288 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g083370.1 | antitermination NusB domain protein, putative ...   301   6e-82

>Medtr4g083370.1 | antitermination NusB domain protein, putative |
           HC | chr4:32442640-32447318 | 20130731
          Length = 264

 Score =  301 bits (770), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 159/248 (64%), Positives = 191/248 (77%), Gaps = 20/248 (8%)

Query: 31  FPLPSSLVNHNR--DF--FLAKPQNKT-----LFTRCSVASSAVAVDRDEASGLGKPDTA 81
           F  PSSL+N++R   F  FL KP+  T     L  +CS+  S +A+D+DE S     DT+
Sbjct: 22  FCFPSSLLNNHRYSHFPKFLPKPKINTVTSSPLSLKCSLRGSTLALDKDETSVSEITDTS 81

Query: 82  G--LPKVDKTGRFCSPRAARELALSIIYASCLEGLDPVRLFEKRLNERREAGYQFDQRKL 139
              LPK+DKTGRFCSPRAARELAL              RLFEKR+NERRE GY+F++ KL
Sbjct: 82  SISLPKLDKTGRFCSPRAARELALDWTR---------FRLFEKRMNERREVGYEFNKEKL 132

Query: 140 LEYNPMSFAGPPVTVQSEEEANELLRNIEKESDLEAEILSAPPKLVYNKLILRFTRKLLV 199
           LEYN MSF GPPV V+++E+ANELLRNI+ ES +E E+L+APPKLVY++LILRFTRKLLV
Sbjct: 133 LEYNHMSFGGPPVIVETDEDANELLRNIQLESAIEEEVLAAPPKLVYSRLILRFTRKLLV 192

Query: 200 AVRDSWDSHVLVINKVVPPTWKDEPAGKILELSILHLAMSEMTKLETIHQIVINEAVDLA 259
           AVRD WDSHV VINKV+PP W++EPAGKILELSILHLAMSE+  L+T HQIVINEAVDLA
Sbjct: 193 AVRDRWDSHVPVINKVIPPNWQEEPAGKILELSILHLAMSEIAVLDTRHQIVINEAVDLA 252

Query: 260 KRYCDGAS 267
           KR+CDGA+
Sbjct: 253 KRFCDGAA 260