Miyakogusa Predicted Gene

Lj4g3v0668270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0668270.1 tr|G7JHL2|G7JHL2_MEDTR
DNA-damage-repair/toleration protein DRT111 OS=Medicago truncatula
GN=MTR_4g0,83.08,0,glycine rich nucleic binding domain,G-patch domain;
RNA recognition motif,RNA recognition motif doma,CUFF.47854.1
         (380 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g083380.1 | DNA-damage-repair/toleration protein DRT111 | ...   350   2e-96

>Medtr4g083380.1 | DNA-damage-repair/toleration protein DRT111 | HC
           | chr4:32450824-32455461 | 20130731
          Length = 390

 Score =  350 bits (897), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 213/396 (53%), Positives = 221/396 (55%), Gaps = 22/396 (5%)

Query: 1   MLGGLYGDLPPPSSAEEDKPTTNVWSSSTKMAPATLRKPA---FTPPHTIPRSQXXXXXX 57
           MLGGLYGDLPPPSSAEEDKPTTNVWSSSTKMAPATLRKP+   +TPPHT+ RSQ      
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTTNVWSSSTKMAPATLRKPSSSLYTPPHTLLRSQNKPKIV 60

Query: 58  XXXXXXXXXX----XXXXXXXXXXXXXXXGVQSTVMEEYDPARPNDXXXXXXXXXXXXXX 113
                                        GVQSTVMEEYDPARPND              
Sbjct: 61  NSTKTILSPAPQPILASPLDDVVVQPALVGVQSTVMEEYDPARPNDYEEYRREKKRKARE 120

Query: 114 XXVM-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNISGEEAWRRRAAMXX 166
             +M                                        NISGEEAWRRR  M  
Sbjct: 121 AEMMRELERRREEEEEREKERERERERERERDRDRERDQGDSRLNISGEEAWRRRVGMSG 180

Query: 167 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGKSETGGLGVGAGGQMTAAQRMMAXXXXX 226
                                         +G      LGVGAGGQMTAAQRMMA     
Sbjct: 181 GGGGSGGRGVPRSPSPPGSVDGFSIGKSETVG------LGVGAGGQMTAAQRMMAKMGWK 234

Query: 227 XXXXXXXXXXXITTPLMAKKTDRRAGVIVNASD--NSKKVKSVNFNGVPTRVLLLRNMXX 284
                      ITTPLMAKKTDRRAGVIVNASD  + KKVKSVN NGVPTRVLLLRNM  
Sbjct: 235 QGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDSKSDKKVKSVNINGVPTRVLLLRNMVG 294

Query: 285 XXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALIDL 344
                          CAKYGTVTRVLIFEITEPNFP DEAVRIFVQFERSEETTKAL+DL
Sbjct: 295 PGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKALVDL 354

Query: 345 DGRFFGGRVVRATFYDEDKFGKNELAPMPGEIPGFT 380
           DGR+FGGR VRATFYDEDKF KNELAPMPGEIPGFT
Sbjct: 355 DGRYFGGRTVRATFYDEDKFSKNELAPMPGEIPGFT 390